FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5727, 707 aa
  1>>>pF1KE5727 707 - 707 aa - 707 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9136+/-0.000423; mu= -1.5142+/- 0.026
 mean_var=693.2394+/-168.840, 0's: 0 Z-trim(124.2): 159  B-trim: 2665 in 1/58
 Lambda= 0.048712
 statistics sampled from 44963 (45441) to 44963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.533), width:  16
 Scan time: 14.120

The best scores are:                                      opt bits E(85289)
NP_067633 (OMIM: 616741) PR domain zinc finger pro ( 707) 5006 367.5 9.7e-101


>>NP_067633 (OMIM: 616741) PR domain zinc finger protein  (707 aa)
 initn: 5006 init1: 5006 opt: 5006  Z-score: 1929.6  bits: 367.5 E(85289): 9.7e-101
Smith-Waterman score: 5006; 100.0% identity (100.0% similar) in 707 aa overlap (1-707:1-707)

               10        20        30        40        50        60
pF1KE5 MHGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MHGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 GGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVFSGGGGGAFLHHEHAARQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IPTTATPTHDEKGEERYICWYCWRTFRYPNSLKAHLRFHCVFSGGGGGAFLHHEHAARQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AVPAADGLGLSPKPPAPDFAAPSQAGTLRPHPLGPPPVQACGAREGIKREASSAPSATSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 AVPAADGLGLSPKPPAPDFAAPSQAGTLRPHPLGPPPVQACGAREGIKREASSAPSATSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 TPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 TPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGAGHHHHHHAHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 ARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGAGHHHHHHAHH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 HHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPEEASAFKHVERAPPAAAALPGARY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 HHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPEEASAFKHVERAPPAAAALPGARY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 AQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAFTVYNGELLYGSPATTAYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 AQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAFTVYNGELLYGSPATTAYY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 PLKLHFGGLLKYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQQLSEMAAGKGRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 PLKLHFGGLLKYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQQLSEMAAGKGRGR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 LDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 LKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHPGQSLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHPGQSLLA
              610       620       630       640       650       660

              670       680       690       700       
pF1KE5 KAGDGPGAEPGYPPEPGDPKSDDSDVDVCFTDDQSDPEVGGGGERDL
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KAGDGPGAEPGYPPEPGDPKSDDSDVDVCFTDDQSDPEVGGGGERDL
              670       680       690       700       




707 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:07:27 2016 done: Tue Nov  8 06:07:29 2016
 Total Scan time: 14.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]