FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5717, 657 aa
  1>>>pF1KE5717 657 - 657 aa - 657 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.9237+/-0.000572; mu= -34.0620+/- 0.036
 mean_var=803.4194+/-164.979, 0's: 0 Z-trim(122.6): 46  B-trim: 0 in 0/57
 Lambda= 0.045248
 statistics sampled from 40933 (40987) to 40933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.481), width:  16
 Scan time: 11.210

The best scores are:                                      opt bits E(85289)
NP_031372 (OMIM: 606459) opioid growth factor rece ( 677) 4413 303.8 1.4e-81


>>NP_031372 (OMIM: 606459) opioid growth factor receptor  (677 aa)
 initn: 4413 init1: 4413 opt: 4413  Z-score: 1585.7  bits: 303.8 E(85289): 1.4e-81
Smith-Waterman score: 4560; 97.0% identity (97.0% similar) in 677 aa overlap (1-657:1-677)

               10        20        30        40        50        60
pF1KE5 MDDPDCDSTWEEDEEDAEDAEDEDCEDGEAAGARDADAGDEDEESEEPRAARPSSFQSRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 MDDPDCDSTWEEDEEDAEDAEDEDCEDGEAAGARDADAGDEDEESEEPRAARPSSFQSRM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TGSRNWRATRDMCRYRHNYPDLVERDCNGDTPNLSFYRNEIRFLPNGCFIEDILQNWTDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 TGSRNWRATRDMCRYRHNYPDLVERDCNGDTPNLSFYRNEIRFLPNGCFIEDILQNWTDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YDLLEDNHSYIQWLFPLREPGVNWHAKPLTLREVEVFKSSQEIQERLVRAYELMLGFYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 YDLLEDNHSYIQWLFPLREPGVNWHAKPLTLREVEVFKSSQEIQERLVRAYELMLGFYGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 RLEDRGTGTVGRAQNYQKRFQNLNWRSHNNLRITRILKSLGELGLEHFQAPLVRFFLEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 RLEDRGTGTVGRAQNYQKRFQNLNWRSHNNLRITRILKSLGELGLEHFQAPLVRFFLEET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LVRRELPGVRQSALDYFMFAVRCRHQRRQLVHFAWEHFRPRCKFVWGPQDKLRRFKPSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LVRRELPGVRQSALDYFMFAVRCRHQRRQLVHFAWEHFRPRCKFVWGPQDKLRRFKPSSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 PHPLEGSRKVEEEGSPGDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSVEPQDAGPLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 PHPLEGSRKVEEEGSPGDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSVEPQDAGPLER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 SQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 QGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 QGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQTLA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 LAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 LAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPAGPAGDEPAESPSE
              490       500       510       520       530       540

              550       560                           570       580
pF1KE5 TPGPRPAGPAGDEPAESPSETPGP--------------------SPAGPTRDEPAESPSE
       ::::::::::::::::::::::::                    ::::::::::::::::
NP_031 TPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSE
              550       560       570       580       590       600

              590       600       610       620       630       640
pF1KE5 TPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 TPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAKAGEA
              610       620       630       640       650       660

              650       
pF1KE5 AELQDAEVESSAKSGKP
       :::::::::::::::::
NP_031 AELQDAEVESSAKSGKP
              670       




657 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:01:31 2016 done: Tue Nov  8 06:01:32 2016
 Total Scan time: 11.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]