Result of FASTA (ccds) for
pFN21AE5685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5685, 561 aa
1>>>pF1KE5685 561 - 561 aa - 561 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6556+/-0.000838; mu= 13.0399+/- 0.051
mean_var=114.1531+/-23.070, 0's: 0 Z-trim(110.9): 26 B-trim: 0 in 0/51
Lambda= 0.120041
statistics sampled from 11933 (11953) to 11933 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.367), width: 16
Scan time: 2.300
The best scores are: opt bits E(32554)
CCDS45329.2 CPEB1 gene_id:64506|Hs108|chr15 ( 561) 3887 684.1 1.2e-196
CCDS45330.2 CPEB1 gene_id:64506|Hs108|chr15 ( 486) 3372 594.9 7.2e-170
CCDS42072.2 CPEB1 gene_id:64506|Hs108|chr15 ( 491) 3352 591.5 8.1e-169
CCDS83044.1 CPEB4 gene_id:80315|Hs108|chr5 ( 322) 742 139.3 6.7e-33
CCDS83043.1 CPEB4 gene_id:80315|Hs108|chr5 ( 339) 742 139.3 7e-33
CCDS53553.1 CPEB3 gene_id:22849|Hs108|chr10 ( 684) 744 139.9 9.7e-33
CCDS31246.1 CPEB3 gene_id:22849|Hs108|chr10 ( 698) 744 139.9 9.8e-33
CCDS78087.1 CPEB4 gene_id:80315|Hs108|chr5 ( 704) 742 139.6 1.3e-32
CCDS78086.1 CPEB4 gene_id:80315|Hs108|chr5 ( 712) 742 139.6 1.3e-32
CCDS4390.1 CPEB4 gene_id:80315|Hs108|chr5 ( 729) 742 139.6 1.3e-32
CCDS56326.1 CPEB2 gene_id:132864|Hs108|chr4 (1007) 735 138.4 3.9e-32
CCDS56325.1 CPEB2 gene_id:132864|Hs108|chr4 (1034) 735 138.5 4e-32
>>CCDS45329.2 CPEB1 gene_id:64506|Hs108|chr15 (561 aa)
initn: 3887 init1: 3887 opt: 3887 Z-score: 3644.2 bits: 684.1 E(32554): 1.2e-196
Smith-Waterman score: 3887; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE5 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH
490 500 510 520 530 540
550 560
pF1KE5 SMEGLRHHSPLMRNQKNRDSS
:::::::::::::::::::::
CCDS45 SMEGLRHHSPLMRNQKNRDSS
550 560
>>CCDS45330.2 CPEB1 gene_id:64506|Hs108|chr15 (486 aa)
initn: 3372 init1: 3372 opt: 3372 Z-score: 3163.1 bits: 594.9 E(32554): 7.2e-170
Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
CCDS45 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
400 410 420 430 440 450
530 540 550 560
pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
::::::::::::::::::::::::::::::::::::
CCDS45 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480
>>CCDS42072.2 CPEB1 gene_id:64506|Hs108|chr15 (491 aa)
initn: 1942 init1: 1942 opt: 3352 Z-score: 3144.3 bits: 591.5 E(32554): 8.1e-169
Smith-Waterman score: 3352; 99.0% identity (99.0% similar) in 491 aa overlap (76-561:1-491)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
CCDS42 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKG-----YVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF
400 410 420 430 440 450
530 540 550 560
pF1KE5 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
:::::::::::::::::::::::::::::::::::::::::
CCDS42 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480 490
>>CCDS83044.1 CPEB4 gene_id:80315|Hs108|chr5 (322 aa)
initn: 728 init1: 238 opt: 742 Z-score: 704.1 bits: 139.3 E(32554): 6.7e-33
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:63-313)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS83 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
40 50 60 70 80 90
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
CCDS83 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
100 110 120 130 140
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS83 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
150 160 170 180 190 200
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
CCDS83 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
210 220 230 240 250 260
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS83 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
270 280 290 300 310 320
>>CCDS83043.1 CPEB4 gene_id:80315|Hs108|chr5 (339 aa)
initn: 728 init1: 238 opt: 742 Z-score: 703.8 bits: 139.3 E(32554): 7e-33
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:80-330)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS83 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
50 60 70 80 90 100
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
CCDS83 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
110 120 130 140 150 160
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS83 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
170 180 190 200 210 220
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
CCDS83 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
230 240 250 260 270 280
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS83 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
290 300 310 320 330
>>CCDS53553.1 CPEB3 gene_id:22849|Hs108|chr10 (684 aa)
initn: 756 init1: 238 opt: 744 Z-score: 701.3 bits: 139.9 E(32554): 9.7e-33
Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:425-675)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS53 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV
400 410 420 430 440 450
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: ..
CCDS53 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD
460 470 480 490 500
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS53 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
510 520 530 540 550 560
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :..
CCDS53 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT
570 580 590 600 610 620
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS53 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
630 640 650 660 670 680
>>CCDS31246.1 CPEB3 gene_id:22849|Hs108|chr10 (698 aa)
initn: 756 init1: 238 opt: 744 Z-score: 701.2 bits: 139.9 E(32554): 9.8e-33
Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:439-689)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS31 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV
410 420 430 440 450 460
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: ..
CCDS31 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD
470 480 490 500 510 520
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS31 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
530 540 550 560 570 580
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :..
CCDS31 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT
590 600 610 620 630 640
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS31 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
650 660 670 680 690
>>CCDS78087.1 CPEB4 gene_id:80315|Hs108|chr5 (704 aa)
initn: 773 init1: 238 opt: 742 Z-score: 699.2 bits: 139.6 E(32554): 1.3e-32
Smith-Waterman score: 754; 34.7% identity (57.9% similar) in 461 aa overlap (142-558:259-695)
120 130 140 150 160
pF1KE5 STQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLS-----FLPLDPLGSDLVDKFPAPSVR
::.. : : :...: .: :.:
CCDS78 LSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNL-NKPPSP--W
230 240 250 260 270 280
170 180 190 200 210 220
pF1KE5 GSRLDTRPILDSRSSSPSDSDTSGF--SSGSDHLSDLISSLRISPPLPFLSLSGGGPRDP
.: . : : : ::. . .:. :.: :: : ... :. :.: :
CCDS78 SSYQSPSPT-PSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-----PLNSIS------P
290 300 310 320 330
230 240 250 260 270 280
pF1KE5 LKMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIER---EARL
:: . .: : : . :: . : : : :. . ... : : ... :. :
CCDS78 LKKNFASNHIQLQK---YARPSSAFAPKSWMEDSLNRADNIFPFPDRPRTFDMHSLESSL
340 350 360 370 380 390
290 300 310
pF1KE5 HRQAAAVNEATCTWSGQLP---------------------PRNYKNPI------YSCKVF
: :.. :. .: :. ... :: :::
CCDS78 IDIMRAENDTIKGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVF
400 410 420 430 440 450
320 330 340 350 360 370
pF1KE5 LGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQAC
.::.: :: : .. .:: :: : :.:: : .. :::::..:.:. :.::..:..::
CCDS78 VGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC
460 470 480 490 500 510
380 390 400 410 420 430
pF1KE5 SHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHG
. :: . :. .:: .. : ::. :: :.::.:: . :: ::: .:.:::..
CCDS78 ----IEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR
520 530 540 550 560
440 450 460 470 480 490
pF1KE5 MLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTT
: : :: :.. :.::: ::::::: . ::: :.:::.:.::.::. :.:: ::...
CCDS78 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG
570 580 590 600 610 620
500 510 520 530 540
pF1KE5 KFTKKVQIDPY-LEDSLCHICSS-----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRH
.. :.:.. :: :.:.:: :.. . .:::: . .:..:.:. :: :: : .
CCDS78 EIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREF
630 640 650 660 670 680
550 560
pF1KE5 HSPLMRNQKNRDSS
:.::... .:
CCDS78 HKPLVKEGGDRPRHISFRWN
690 700
>>CCDS78086.1 CPEB4 gene_id:80315|Hs108|chr5 (712 aa)
initn: 773 init1: 238 opt: 742 Z-score: 699.2 bits: 139.6 E(32554): 1.3e-32
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:453-703)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS78 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
430 440 450 460 470 480
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
CCDS78 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
490 500 510 520 530
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS78 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
540 550 560 570 580 590
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
CCDS78 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
600 610 620 630 640 650
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS78 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
660 670 680 690 700 710
>>CCDS4390.1 CPEB4 gene_id:80315|Hs108|chr5 (729 aa)
initn: 773 init1: 238 opt: 742 Z-score: 699.0 bits: 139.6 E(32554): 1.3e-32
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:470-720)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
CCDS43 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
440 450 460 470 480 490
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
CCDS43 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
500 510 520 530 540 550
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
CCDS43 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
560 570 580 590 600 610
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
CCDS43 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
620 630 640 650 660 670
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
CCDS43 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
680 690 700 710 720
561 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:50:42 2016 done: Tue Nov 8 05:50:43 2016
Total Scan time: 2.300 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]