Result of FASTA (omim) for
pFN21AE5682
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5682, 548 aa
1>>>pF1KE5682 548 - 548 aa - 548 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.2722+/-0.000357; mu= -4.6527+/- 0.022
mean_var=238.7505+/-48.811, 0's: 0 Z-trim(121.6): 45 B-trim: 38 in 1/56
Lambda= 0.083005
statistics sampled from 38425 (38489) to 38425 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.451), width: 16
Scan time: 10.120
The best scores are: opt bits E(85289)
NP_060551 (OMIM: 612661,613988) telomerase Cajal b ( 548) 3843 473.2 9.3e-133
NP_001137462 (OMIM: 612661,613988) telomerase Caja ( 548) 3843 473.2 9.3e-133
NP_001137463 (OMIM: 612661,613988) telomerase Caja ( 548) 3843 473.2 9.3e-133
NP_001137464 (OMIM: 612661,613988) telomerase Caja ( 548) 3843 473.2 9.3e-133
XP_011522254 (OMIM: 612661,613988) PREDICTED: telo ( 335) 2368 296.4 9.1e-80
>>NP_060551 (OMIM: 612661,613988) telomerase Cajal body (548 aa)
initn: 3843 init1: 3843 opt: 3843 Z-score: 2504.4 bits: 473.2 E(85289): 9.3e-133
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KE5 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
490 500 510 520 530 540
pF1KE5 EGGVGELI
::::::::
NP_060 EGGVGELI
>>NP_001137462 (OMIM: 612661,613988) telomerase Cajal bo (548 aa)
initn: 3843 init1: 3843 opt: 3843 Z-score: 2504.4 bits: 473.2 E(85289): 9.3e-133
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KE5 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
490 500 510 520 530 540
pF1KE5 EGGVGELI
::::::::
NP_001 EGGVGELI
>>NP_001137463 (OMIM: 612661,613988) telomerase Cajal bo (548 aa)
initn: 3843 init1: 3843 opt: 3843 Z-score: 2504.4 bits: 473.2 E(85289): 9.3e-133
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KE5 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
490 500 510 520 530 540
pF1KE5 EGGVGELI
::::::::
NP_001 EGGVGELI
>>NP_001137464 (OMIM: 612661,613988) telomerase Cajal bo (548 aa)
initn: 3843 init1: 3843 opt: 3843 Z-score: 2504.4 bits: 473.2 E(85289): 9.3e-133
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)
10 20 30 40 50 60
pF1KE5 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
490 500 510 520 530 540
pF1KE5 EGGVGELI
::::::::
NP_001 EGGVGELI
>>XP_011522254 (OMIM: 612661,613988) PREDICTED: telomera (335 aa)
initn: 2368 init1: 2368 opt: 2368 Z-score: 1553.1 bits: 296.4 E(85289): 9.1e-80
Smith-Waterman score: 2368; 100.0% identity (100.0% similar) in 335 aa overlap (214-548:1-335)
190 200 210 220 230 240
pF1KE5 ILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQPDTS
::::::::::::::::::::::::::::::
XP_011 MVPVLRMVEGDTIYDYCWYSLMSSAQPDTS
10 20 30
250 260 270 280 290 300
pF1KE5 YVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVF
40 50 60 70 80 90
310 320 330 340 350 360
pF1KE5 STARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPLALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPLALL
100 110 120 130 140 150
370 380 390 400 410 420
pF1KE5 GGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFDLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFDLDP
160 170 180 190 200 210
430 440 450 460 470 480
pF1KE5 TGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATASGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATASGQR
220 230 240 250 260 270
490 500 510 520 530 540
pF1KE5 VFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGTEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGTEGG
280 290 300 310 320 330
pF1KE5 VGELI
:::::
XP_011 VGELI
548 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:49:24 2016 done: Tue Nov 8 05:49:25 2016
Total Scan time: 10.120 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]