FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5674, 556 aa
  1>>>pF1KE5674 556 - 556 aa - 556 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1638+/-0.0009; mu= 14.4750+/- 0.054
 mean_var=75.5533+/-15.303, 0's: 0 Z-trim(106.7): 12  B-trim: 169 in 1/50
 Lambda= 0.147553
 statistics sampled from 9150 (9156) to 9150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.281), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS11336.1 MED1 gene_id:5469|Hs108|chr17          (1581) 3635 783.5       0


>>CCDS11336.1 MED1 gene_id:5469|Hs108|chr17               (1581 aa)
 initn: 3674 init1: 3633 opt: 3635  Z-score: 4172.9  bits: 783.5 E(32554):    0
Smith-Waterman score: 3635; 98.2% identity (98.8% similar) in 560 aa overlap (1-555:1-560)

               10        20        30        40        50        60
pF1KE5 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 CDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQDLSKMAIMYWKATNAGPLDKILHGSVGYLTPRSGGHLMNLKYYVSPSDLLDDKTASPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILHENNVSRSLGMNASVTIEGTSAVYKLPIAPLIMGSHPVDNKWTPSFSSITSANSVDLP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ACFFLKFPQPIPVSRAFVQKLQNCTGIPLFETQPTYAPLYELITQFELSKDPDPIPLNHN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLVSKITFQHPGRVPLILNLIRHQVAYNTL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IGSCVKRTILKEDSPGLLQFEVCPLSESRFSVSFQHPVNDSLVCVVMDVQDSTHVSCKLY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNL
              490       500       510       520       530       540

                   550                                             
pF1KE5 PPASSPG-----SKNPELGSG                                       
       :::::::     ..::  :.                                        
CCDS11 PPASSPGYGMTTGNNPMSGTTTPTNTFPGGPITTLFNMSMSIKDRHESVGHGEDFSKVSQ
              550       560       570       580       590       600




556 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:44:13 2016 done: Tue Nov  8 05:44:14 2016
 Total Scan time:  2.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]