FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5664, 524 aa
  1>>>pF1KE5664 524 - 524 aa - 524 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5408+/-0.000946; mu= 16.6538+/- 0.057
 mean_var=61.7724+/-12.050, 0's: 0 Z-trim(104.5): 23  B-trim: 2 in 1/49
 Lambda= 0.163184
 statistics sampled from 7951 (7958) to 7951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.244), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS608.1 OMA1 gene_id:115209|Hs108|chr1           ( 524) 3550 844.6       0


>>CCDS608.1 OMA1 gene_id:115209|Hs108|chr1                (524 aa)
 initn: 3550 init1: 3550 opt: 3550  Z-score: 4512.5  bits: 844.6 E(32554):    0
Smith-Waterman score: 3550; 100.0% identity (100.0% similar) in 524 aa overlap (1-524:1-524)

               10        20        30        40        50        60
pF1KE5 MSFICGLQSAARNHVFFRFNSLSNWRKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MSFICGLQSAARNHVFFRFNSLSNWRKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSFLPGNFHFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WSFLPGNFHFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLFAIIVGRGIRKWWQALPPNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLFAIIVGRGIRKWWQALPPNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 YEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 PNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 ICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPLSNPDPRLLFKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPLSNPDPRLLFKLS
              430       440       450       460       470       480

              490       500       510       520    
pF1KE5 TKHFLEESEKEDLNITKKQKMDTLPIQKQEQIPLTYIVEKRTGS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TKHFLEESEKEDLNITKKQKMDTLPIQKQEQIPLTYIVEKRTGS
              490       500       510       520    




524 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:39:52 2016 done: Tue Nov  8 05:39:52 2016
 Total Scan time:  3.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]