Result of FASTA (ccds) for
pFN21AE5653
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5653, 506 aa
1>>>pF1KE5653 506 - 506 aa - 506 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8773+/-0.000989; mu= 16.6085+/- 0.059
mean_var=104.6354+/-21.574, 0's: 0 Z-trim(106.2): 72 B-trim: 0 in 0/54
Lambda= 0.125382
statistics sampled from 8801 (8849) to 8801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.272), width: 16
Scan time: 3.120
The best scores are: opt bits E(32554)
CCDS48014.1 RC3H2 gene_id:54542|Hs108|chr9 (1064) 2943 543.7 3.8e-154
CCDS43874.1 RC3H2 gene_id:54542|Hs108|chr9 (1191) 2943 543.7 4.1e-154
CCDS72987.1 RC3H1 gene_id:149041|Hs108|chr1 (1125) 2512 465.7 1.2e-130
CCDS30940.1 RC3H1 gene_id:149041|Hs108|chr1 (1133) 2512 465.8 1.2e-130
>>CCDS48014.1 RC3H2 gene_id:54542|Hs108|chr9 (1064 aa)
initn: 2943 init1: 2943 opt: 2943 Z-score: 2880.9 bits: 543.7 E(32554): 3.8e-154
Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS
::::::::::::::::::::::
CCDS48 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
430 440 450 460 470 480
>>CCDS43874.1 RC3H2 gene_id:54542|Hs108|chr9 (1191 aa)
initn: 2943 init1: 2943 opt: 2943 Z-score: 2880.3 bits: 543.7 E(32554): 4.1e-154
Smith-Waterman score: 2943; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 QQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDREKIS
::::::::::::::::::::::
CCDS43 QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
430 440 450 460 470 480
>>CCDS72987.1 RC3H1 gene_id:149041|Hs108|chr1 (1125 aa)
initn: 2393 init1: 1915 opt: 2512 Z-score: 2459.3 bits: 465.7 E(32554): 1.2e-130
Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445)
10 20 30 40 50 60
pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.::::
CCDS72 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA
:..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::.
CCDS72 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
: .::.:::::::::::::.:::::::::.::::::::::::::::::::::::::::
CCDS72 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP
::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.:
CCDS72 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL
.::::::::: .:::::::::::::.: :::.:::::::.::::::::::::::::::::
CCDS72 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR
:::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: :::
CCDS72 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE
:..:.::::::..::::::::::::
CCDS72 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE
430 440 450 460 470 480
>>CCDS30940.1 RC3H1 gene_id:149041|Hs108|chr1 (1133 aa)
initn: 2393 init1: 1915 opt: 2512 Z-score: 2459.2 bits: 465.8 E(32554): 1.2e-130
Smith-Waterman score: 2512; 84.0% identity (94.8% similar) in 445 aa overlap (1-442:1-445)
10 20 30 40 50 60
pF1KE5 MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
::::: :::.::::::: . :::...:::::::.::::: :::::::::::::::.::::
CCDS30 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 IDVLPVNFALLQLVGAQVPDHQSIKL-SNLGENKHYEVAKKCVEDLALYLKPLSGGKGVA
:..:::: :::::::::::..: : : :.. ..:::: ::::::.:::::::::...::.
CCDS30 IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 --SLNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
: .::.:::::::::::::.:::::::::.::::::::::::::::::::::::::::
CCDS30 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 ANLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISP
::::::::::::::::::::::::::::::::::.:::::::::.:::.:::::::::.:
CCDS30 SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 EQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELL
.::::::::: .:::::::::::::.: :::.:::::::.::::::::::::::::::::
CCDS30 DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 ANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCR
:::::.::: ::::::::..:::.::::::::.:::.:.:: . :: .::::: :::
CCDS30 ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 DLRQQGGCPRGTNCTFAHSQEELEKCNPRGLYLHCCLLSSVASLGTVHNELYKQQHCDRE
:..:.::::::..::::::::::::
CCDS30 DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE
430 440 450 460 470 480
506 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:07:58 2016 done: Tue Nov 8 04:07:59 2016
Total Scan time: 3.120 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]