Result of FASTA (omim) for
pFN21AE5640
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5640, 565 aa
1>>>pF1KE5640 565 - 565 aa - 565 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8202+/-0.000463; mu= 12.2777+/- 0.029
mean_var=134.7300+/-28.448, 0's: 0 Z-trim(114.0): 148 B-trim: 371 in 1/53
Lambda= 0.110495
statistics sampled from 23516 (23686) to 23516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.278), width: 16
Scan time: 8.990
The best scores are: opt bits E(85289)
NP_006581 (OMIM: 611594) U4/U6.U5 tri-snRNP-associ ( 565) 3760 611.5 2.3e-174
NP_001243654 (OMIM: 611594) U4/U6.U5 tri-snRNP-ass ( 565) 3760 611.5 2.3e-174
NP_001243656 (OMIM: 611594) U4/U6.U5 tri-snRNP-ass ( 487) 3193 521.1 3.3e-147
NP_001243655 (OMIM: 611594) U4/U6.U5 tri-snRNP-ass ( 488) 3164 516.4 8.1e-146
NP_001243657 (OMIM: 611594) U4/U6.U5 tri-snRNP-ass ( 462) 2805 459.2 1.3e-128
XP_011530790 (OMIM: 611594) PREDICTED: U4/U6.U5 tr ( 296) 1975 326.7 6.3e-89
XP_016858671 (OMIM: 611594) PREDICTED: U4/U6.U5 tr ( 296) 1975 326.7 6.3e-89
XP_006711986 (OMIM: 611594) PREDICTED: U4/U6.U5 tr ( 296) 1975 326.7 6.3e-89
XP_006711985 (OMIM: 611594) PREDICTED: U4/U6.U5 tr ( 296) 1975 326.7 6.3e-89
XP_011530789 (OMIM: 611594) PREDICTED: U4/U6.U5 tr ( 296) 1975 326.7 6.3e-89
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 334 65.5 8.3e-10
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 334 65.5 8.3e-10
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 334 65.6 8.9e-10
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 334 65.6 9.4e-10
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 334 65.6 9.4e-10
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 334 65.6 9.4e-10
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 334 65.6 9.4e-10
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 334 65.6 9.6e-10
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 334 65.6 9.6e-10
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 334 65.6 9.6e-10
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 334 65.6 9.6e-10
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 310 61.6 8.6e-09
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 310 61.6 8.6e-09
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 310 61.6 8.6e-09
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 306 60.7 9.1e-09
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 304 60.4 1.1e-08
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 304 60.5 1.2e-08
XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 246 51.2 6.7e-06
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 246 51.2 7.9e-06
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 246 51.2 7.9e-06
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 246 51.3 8.4e-06
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 246 51.3 8.7e-06
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 246 51.3 8.7e-06
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 246 51.3 8.7e-06
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 246 51.3 9e-06
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 227 48.5 0.00011
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 227 48.5 0.00012
XP_005251723 (OMIM: 615143) PREDICTED: ubiquitin c ( 675) 224 47.9 0.00012
XP_016869710 (OMIM: 615143) PREDICTED: ubiquitin c ( 675) 224 47.9 0.00012
NP_001103773 (OMIM: 615143) ubiquitin carboxyl-ter ( 914) 224 48.0 0.00016
NP_006667 (OMIM: 615143) ubiquitin carboxyl-termin ( 914) 224 48.0 0.00016
XP_011516463 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 224 48.0 0.00016
XP_011516464 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 224 48.0 0.00016
NP_001008563 (OMIM: 615143) ubiquitin carboxyl-ter ( 914) 224 48.0 0.00016
XP_005251722 (OMIM: 615143) PREDICTED: ubiquitin c ( 914) 224 48.0 0.00016
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 219 47.1 0.00021
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 219 47.2 0.00026
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 219 47.2 0.00026
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 219 47.2 0.00028
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 219 47.2 0.00029
>>NP_006581 (OMIM: 611594) U4/U6.U5 tri-snRNP-associated (565 aa)
initn: 3760 init1: 3760 opt: 3760 Z-score: 3251.5 bits: 611.5 E(85289): 2.3e-174
Smith-Waterman score: 3760; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1-565)
10 20 30 40 50 60
pF1KE5 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
490 500 510 520 530 540
550 560
pF1KE5 MITLSEAYIQIWKRRDNDETNQQGA
:::::::::::::::::::::::::
NP_006 MITLSEAYIQIWKRRDNDETNQQGA
550 560
>>NP_001243654 (OMIM: 611594) U4/U6.U5 tri-snRNP-associa (565 aa)
initn: 3760 init1: 3760 opt: 3760 Z-score: 3251.5 bits: 611.5 E(85289): 2.3e-174
Smith-Waterman score: 3760; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1-565)
10 20 30 40 50 60
pF1KE5 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
490 500 510 520 530 540
550 560
pF1KE5 MITLSEAYIQIWKRRDNDETNQQGA
:::::::::::::::::::::::::
NP_001 MITLSEAYIQIWKRRDNDETNQQGA
550 560
>>NP_001243656 (OMIM: 611594) U4/U6.U5 tri-snRNP-associa (487 aa)
initn: 3189 init1: 3189 opt: 3193 Z-score: 2763.9 bits: 521.1 E(85289): 3.3e-147
Smith-Waterman score: 3193; 99.0% identity (99.2% similar) in 482 aa overlap (84-565:6-487)
60 70 80 90 100 110
pF1KE5 FEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINR
: . ::::::::::::::::::::::::
NP_001 MLTAVPSHLFSAKNGRVDSEDRRSRHCPYLDTINR
10 20 30
120 130 140 150 160 170
pF1KE5 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE5 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE5 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE5 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE5 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE5 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF
340 350 360 370 380 390
480 490 500 510 520 530
pF1KE5 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ
400 410 420 430 440 450
540 550 560
pF1KE5 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::::::::
NP_001 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA
460 470 480
>>NP_001243655 (OMIM: 611594) U4/U6.U5 tri-snRNP-associa (488 aa)
initn: 3164 init1: 3164 opt: 3164 Z-score: 2738.9 bits: 516.4 E(85289): 8.1e-146
Smith-Waterman score: 3164; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)
10 20 30 40 50 60
pF1KE5 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSRGSPVRVKREFEPASAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITGQAN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
NP_001 GMNYKTSR
>>NP_001243657 (OMIM: 611594) U4/U6.U5 tri-snRNP-associa (462 aa)
initn: 2953 init1: 2805 opt: 2805 Z-score: 2429.9 bits: 459.2 E(85289): 1.3e-128
Smith-Waterman score: 2910; 92.7% identity (93.4% similar) in 482 aa overlap (84-565:6-462)
60 70 80 90 100 110
pF1KE5 FEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINR
: . :::::::::::::::::::::::
NP_001 MLTAVPSHLFSAKNGRVDSEDRRSRHCPYLDTIN-
10 20 30
120 130 140 150 160 170
pF1KE5 SVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFY
:.: . :::::::::::::::::::::::::::::
NP_001 -------------SFS-----------PFPTGRGLKSHAYIHSVQFSHHVFLNLHTLKFY
40 50 60 70
180 190 200 210 220 230
pF1KE5 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKAN
80 90 100 110 120 130
240 250 260 270 280 290
pF1KE5 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAH
140 150 160 170 180 190
300 310 320 330 340 350
pF1KE5 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSM
200 210 220 230 240 250
360 370 380 390 400 410
pF1KE5 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQV
260 270 280 290 300 310
420 430 440 450 460 470
pF1KE5 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNF
320 330 340 350 360 370
480 490 500 510 520 530
pF1KE5 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQ
380 390 400 410 420 430
540 550 560
pF1KE5 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::::::::
NP_001 VTDILPQMITLSEAYIQIWKRRDNDETNQQGA
440 450 460
>>XP_011530790 (OMIM: 611594) PREDICTED: U4/U6.U5 tri-sn (296 aa)
initn: 1975 init1: 1975 opt: 1975 Z-score: 1717.5 bits: 326.7 E(85289): 6.3e-89
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 296 aa overlap (270-565:1-296)
240 250 260 270 280 290
pF1KE5 LQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEM
::::::::::::::::::::::::::::::
XP_011 MFLLVQRFGELMRKLWNPRNFKAHVSPHEM
10 20 30
300 310 320 330 340 350
pF1KE5 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
40 50 60 70 80 90
360 370 380 390 400 410
pF1KE5 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KE5 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KE5 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
220 230 240 250 260 270
540 550 560
pF1KE5 QMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::
XP_011 QMITLSEAYIQIWKRRDNDETNQQGA
280 290
>>XP_016858671 (OMIM: 611594) PREDICTED: U4/U6.U5 tri-sn (296 aa)
initn: 1975 init1: 1975 opt: 1975 Z-score: 1717.5 bits: 326.7 E(85289): 6.3e-89
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 296 aa overlap (270-565:1-296)
240 250 260 270 280 290
pF1KE5 LQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEM
::::::::::::::::::::::::::::::
XP_016 MFLLVQRFGELMRKLWNPRNFKAHVSPHEM
10 20 30
300 310 320 330 340 350
pF1KE5 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
40 50 60 70 80 90
360 370 380 390 400 410
pF1KE5 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KE5 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KE5 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
220 230 240 250 260 270
540 550 560
pF1KE5 QMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::
XP_016 QMITLSEAYIQIWKRRDNDETNQQGA
280 290
>>XP_006711986 (OMIM: 611594) PREDICTED: U4/U6.U5 tri-sn (296 aa)
initn: 1975 init1: 1975 opt: 1975 Z-score: 1717.5 bits: 326.7 E(85289): 6.3e-89
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 296 aa overlap (270-565:1-296)
240 250 260 270 280 290
pF1KE5 LQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEM
::::::::::::::::::::::::::::::
XP_006 MFLLVQRFGELMRKLWNPRNFKAHVSPHEM
10 20 30
300 310 320 330 340 350
pF1KE5 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
40 50 60 70 80 90
360 370 380 390 400 410
pF1KE5 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KE5 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KE5 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
220 230 240 250 260 270
540 550 560
pF1KE5 QMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::
XP_006 QMITLSEAYIQIWKRRDNDETNQQGA
280 290
>>XP_006711985 (OMIM: 611594) PREDICTED: U4/U6.U5 tri-sn (296 aa)
initn: 1975 init1: 1975 opt: 1975 Z-score: 1717.5 bits: 326.7 E(85289): 6.3e-89
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 296 aa overlap (270-565:1-296)
240 250 260 270 280 290
pF1KE5 LQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEM
::::::::::::::::::::::::::::::
XP_006 MFLLVQRFGELMRKLWNPRNFKAHVSPHEM
10 20 30
300 310 320 330 340 350
pF1KE5 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
40 50 60 70 80 90
360 370 380 390 400 410
pF1KE5 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KE5 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KE5 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
220 230 240 250 260 270
540 550 560
pF1KE5 QMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::
XP_006 QMITLSEAYIQIWKRRDNDETNQQGA
280 290
>>XP_011530789 (OMIM: 611594) PREDICTED: U4/U6.U5 tri-sn (296 aa)
initn: 1975 init1: 1975 opt: 1975 Z-score: 1717.5 bits: 326.7 E(85289): 6.3e-89
Smith-Waterman score: 1975; 100.0% identity (100.0% similar) in 296 aa overlap (270-565:1-296)
240 250 260 270 280 290
pF1KE5 LQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEM
::::::::::::::::::::::::::::::
XP_011 MFLLVQRFGELMRKLWNPRNFKAHVSPHEM
10 20 30
300 310 320 330 340 350
pF1KE5 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKK
40 50 60 70 80 90
360 370 380 390 400 410
pF1KE5 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNIL
100 110 120 130 140 150
420 430 440 450 460 470
pF1KE5 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVD
160 170 180 190 200 210
480 490 500 510 520 530
pF1KE5 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILP
220 230 240 250 260 270
540 550 560
pF1KE5 QMITLSEAYIQIWKRRDNDETNQQGA
::::::::::::::::::::::::::
XP_011 QMITLSEAYIQIWKRRDNDETNQQGA
280 290
565 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:27:08 2016 done: Tue Nov 8 05:27:10 2016
Total Scan time: 8.990 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]