FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5639, 562 aa
  1>>>pF1KE5639 562 - 562 aa - 562 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8043+/-0.000921; mu= 4.0817+/- 0.055
 mean_var=242.2698+/-49.519, 0's: 0 Z-trim(114.1): 37  B-trim: 129 in 2/50
 Lambda= 0.082400
 statistics sampled from 14622 (14638) to 14622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.45), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS46140.1 CCDC155 gene_id:147872|Hs108|chr19     ( 562) 3718 455.1  1e-127


>>CCDS46140.1 CCDC155 gene_id:147872|Hs108|chr19          (562 aa)
 initn: 3718 init1: 3718 opt: 3718  Z-score: 2406.5  bits: 455.1 E(32554): 1e-127
Smith-Waterman score: 3718; 99.8% identity (100.0% similar) in 562 aa overlap (1-562:1-562)

               10        20        30        40        50        60
pF1KE5 MDLPEGPVGGPTAEMYLRERPEEARLGMPVSLEEQILNSTFEACDPQRTGTVAVAQVLAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDLPEGPVGGPTAEMYLRERPEEARLGMPVSLEEQILNSTFEACDPQRTGTVAVAQVLAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LEAVTGQGPQDARLQTLANSLDPNGEGPKATVDLDTFLVVMRDWIAACQLHGGLELEEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LEAVTGQGPQDARLQTLANSLDPNGEGPKATVDLDTFLVVMRDWIAACQLHGGLELEEET
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 AFQGALTSQQLPSGCPEAEEPANLESFGGEDPRPELQATADLLSSLEDLELSNRRLVGEN
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AFQGALTSRQLPSGCPEAEEPANLESFGGEDPRPELQATADLLSSLEDLELSNRRLVGEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AKLQRSMETAEEGSARLGEEILALRKQLHSTQQALQFAKAMDEELEDLKTLARSLEEQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AKLQRSMETAEEGSARLGEEILALRKQLHSTQQALQFAKAMDEELEDLKTLARSLEEQNR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SLLAQARQAEKEQQHLVAEMETLQEENGKLLAERDGVKKRSQELAMEKDTLKRQLFECEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLLAQARQAEKEQQHLVAEMETLQEENGKLLAERDGVKKRSQELAMEKDTLKRQLFECEH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LICQRDTILSERTRDVESLAQTLEEYRVTTQELRLEISRLEEQLSQTYEGPDELPEGAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LICQRDTILSERTRDVESLAQTLEEYRVTTQELRLEISRLEEQLSQTYEGPDELPEGAQL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 RRVGWTELLPPSLGLEIEAIRQKQEVATADLSNPLCGVWQWEEVIHETSEETEFPSEAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RRVGWTELLPPSLGLEIEAIRQKQEVATADLSNPLCGVWQWEEVIHETSEETEFPSEAPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 GGQRNFQGEPAHPEEGRKEPSMWLTRREEEEDAESQVTADLPVPLGAPRPGDIPENPPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GGQRNFQGEPAHPEEGRKEPSMWLTRREEEEDAESQVTADLPVPLGAPRPGDIPENPPER
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 PARRELQQALVPVMKKLVPVRRRAWGQLCLPPQRLRVTRHPLIPAPVLGLLLLLLLSVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PARRELQQALVPVMKKLVPVRRRAWGQLCLPPQRLRVTRHPLIPAPVLGLLLLLLLSVLL
              490       500       510       520       530       540

              550       560  
pF1KE5 LGPSPPPTWPHLQLCYLQPPPV
       ::::::::::::::::::::::
CCDS46 LGPSPPPTWPHLQLCYLQPPPV
              550       560  




562 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:26:31 2016 done: Tue Nov  8 05:26:31 2016
 Total Scan time:  2.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]