Result of FASTA (omim) for
pFN21AE5637
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5637, 504 aa
1>>>pF1KE5637 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2991+/-0.000481; mu= 19.2853+/- 0.030
mean_var=76.5690+/-15.715, 0's: 0 Z-trim(109.6): 22 B-trim: 897 in 1/50
Lambda= 0.146571
statistics sampled from 17815 (17823) to 17815 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.554), E-opt: 0.2 (0.209), width: 16
Scan time: 7.310
The best scores are: opt bits E(85289)
XP_011535408 (OMIM: 604857) PREDICTED: signal reco ( 504) 3269 701.2 1.7e-201
NP_003127 (OMIM: 604857) signal recognition partic ( 504) 3269 701.2 1.7e-201
NP_001139754 (OMIM: 604857) signal recognition par ( 455) 2938 631.2 1.9e-180
XP_016877104 (OMIM: 604857) PREDICTED: signal reco ( 400) 2633 566.7 4.4e-161
XP_005268081 (OMIM: 604857) PREDICTED: signal reco ( 447) 2491 536.7 5.3e-152
>>XP_011535408 (OMIM: 604857) PREDICTED: signal recognit (504 aa)
initn: 3269 init1: 3269 opt: 3269 Z-score: 3738.3 bits: 701.2 E(85289): 1.7e-201
Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
430 440 450 460 470 480
490 500
pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM
::::::::::::::::::::::::
XP_011 QSMMRQFQQGAAGNMKGMMGFNNM
490 500
>>NP_003127 (OMIM: 604857) signal recognition particle 5 (504 aa)
initn: 3269 init1: 3269 opt: 3269 Z-score: 3738.3 bits: 701.2 E(85289): 1.7e-201
Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
430 440 450 460 470 480
490 500
pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM
::::::::::::::::::::::::
NP_003 QSMMRQFQQGAAGNMKGMMGFNNM
490 500
>>NP_001139754 (OMIM: 604857) signal recognition particl (455 aa)
initn: 2938 init1: 2938 opt: 2938 Z-score: 3360.7 bits: 631.2 E(85289): 1.9e-180
Smith-Waterman score: 2938; 99.8% identity (100.0% similar) in 448 aa overlap (57-504:8-455)
30 40 50 60 70 80
pF1KE5 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL
.:::::::::::::::::::::::::::::
NP_001 MPPLSMKRSAIDLEEMASGLNKRKMIQHAVFKELVKL
10 20 30
90 100 110 120 130 140
pF1KE5 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE5 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE5 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE5 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE5 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE
280 290 300 310 320 330
390 400 410 420 430 440
pF1KE5 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM
340 350 360 370 380 390
450 460 470 480 490 500
pF1KE5 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM
400 410 420 430 440 450
>>XP_016877104 (OMIM: 604857) PREDICTED: signal recognit (400 aa)
initn: 2633 init1: 2633 opt: 2633 Z-score: 3012.9 bits: 566.7 E(85289): 4.4e-161
Smith-Waterman score: 2633; 100.0% identity (100.0% similar) in 400 aa overlap (105-504:1-400)
80 90 100 110 120 130
pF1KE5 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCL
::::::::::::::::::::::::::::::
XP_016 MFVGLQGSGKTTTCSKLAYYYQRKGWKTCL
10 20 30
140 150 160 170 180 190
pF1KE5 ICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHA
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDD
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 NEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKK
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 LMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM
280 290 300 310 320 330
440 450 460 470 480 490
pF1KE5 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGN
340 350 360 370 380 390
500
pF1KE5 MKGMMGFNNM
::::::::::
XP_016 MKGMMGFNNM
400
>>XP_005268081 (OMIM: 604857) PREDICTED: signal recognit (447 aa)
initn: 2508 init1: 2482 opt: 2491 Z-score: 2849.9 bits: 536.7 E(85289): 5.3e-152
Smith-Waterman score: 2782; 88.7% identity (88.7% similar) in 504 aa overlap (1-504:1-447)
10 20 30 40 50 60
pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
:::::::::::::::::::::::::
XP_005 SKGNEQESMARLKKLMTIMDSMNDQ-----------------------------------
370 380
430 440 450 460 470 480
pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
::::::::::::::::::::::::::::::::::::::
XP_005 ----------------------GGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
390 400 410 420
490 500
pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM
::::::::::::::::::::::::
XP_005 QSMMRQFQQGAAGNMKGMMGFNNM
430 440
504 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:25:12 2016 done: Tue Nov 8 05:25:13 2016
Total Scan time: 7.310 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]