Result of FASTA (omim) for
pFN21AE5626
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5626, 483 aa
1>>>pF1KE5626 483 - 483 aa - 483 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3971+/-0.000386; mu= 13.6155+/- 0.024
mean_var=111.3360+/-21.688, 0's: 0 Z-trim(115.1): 157 B-trim: 392 in 1/54
Lambda= 0.121550
statistics sampled from 25155 (25338) to 25155 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.297), width: 16
Scan time: 7.860
The best scores are: opt bits E(85289)
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 1226 226.1 1.7e-58
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 879 165.4 5.3e-40
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 757 144.0 1.6e-33
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 757 144.0 1.6e-33
NP_957518 (OMIM: 615428) probable ATP-dependent RN ( 406) 749 142.4 2.3e-33
NP_004389 (OMIM: 601235) probable ATP-dependent RN ( 875) 701 134.2 1.4e-30
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729) 691 132.4 4.2e-30
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731) 691 132.4 4.2e-30
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 687 131.7 7.1e-30
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 687 131.8 8.3e-30
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 687 131.8 8.3e-30
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 687 131.8 8.3e-30
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 687 131.8 8.3e-30
NP_006764 (OMIM: 606355) ATP-dependent RNA helicas ( 670) 682 130.8 1.2e-29
NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 673 129.1 2.5e-29
NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 673 129.1 2.5e-29
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 666 127.8 5.6e-29
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 660 126.9 1.7e-28
NP_001307524 (OMIM: 180630) probable ATP-dependent ( 614) 650 125.2 5.3e-28
NP_001307525 (OMIM: 180630) probable ATP-dependent ( 614) 650 125.2 5.3e-28
NP_004387 (OMIM: 180630) probable ATP-dependent RN ( 614) 650 125.2 5.3e-28
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614) 650 125.2 5.3e-28
NP_001160006 (OMIM: 605281) probable ATP-dependent ( 575) 635 122.5 3.1e-27
XP_011541799 (OMIM: 605281) PREDICTED: probable AT ( 678) 635 122.6 3.6e-27
NP_001136021 (OMIM: 605281) probable ATP-dependent ( 690) 635 122.6 3.6e-27
XP_011541797 (OMIM: 605281) PREDICTED: probable AT ( 698) 635 122.6 3.7e-27
NP_001160005 (OMIM: 605281) probable ATP-dependent ( 704) 635 122.6 3.7e-27
NP_077726 (OMIM: 605281) probable ATP-dependent RN ( 724) 635 122.6 3.8e-27
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 629 121.3 5e-27
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 623 120.3 1.1e-26
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 623 120.4 1.3e-26
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 623 120.4 1.3e-26
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 623 120.4 1.4e-26
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 623 120.4 1.5e-26
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 605 117.1 9.2e-26
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 601 116.6 2.1e-25
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 601 116.6 2.1e-25
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 601 116.6 2.1e-25
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 601 116.6 2.1e-25
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 586 113.9 1.1e-24
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 586 113.9 1.1e-24
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 586 113.9 1.1e-24
NP_001308661 (OMIM: 608170,616871) probable ATP-de ( 496) 560 109.3 2.5e-23
NP_001308759 (OMIM: 608170,616871) probable ATP-de ( 496) 560 109.3 2.5e-23
NP_057306 (OMIM: 608170,616871) probable ATP-depen ( 622) 560 109.4 3e-23
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824) 553 108.2 8.9e-23
NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491) 535 104.9 5.3e-22
XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581) 535 105.0 6e-22
NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599) 535 105.0 6.2e-22
NP_001307110 (OMIM: 174300,615464) probable ATP-de ( 567) 532 104.4 8.5e-22
>>NP_057439 (OMIM: 615428) probable ATP-dependent RNA he (455 aa)
initn: 1219 init1: 597 opt: 1226 Z-score: 1171.4 bits: 226.1 E(85289): 1.7e-58
Smith-Waterman score: 1232; 44.6% identity (75.6% similar) in 439 aa overlap (4-442:26-453)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILE
: .::... : : : ::: .:: .:. :: :.
NP_057 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 GRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLG
::: .: :.::::::.::.::::. : : : .: ::::::::::.::.:::..::. .:
NP_057 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLL
... .::::.: ..:.: :..:::..::::::: :::.... :... ...::::::::.:
NP_057 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 EQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQ
.. :: .... :: ..: :.:.:::::.: ...:: : ..: ... .:::.
NP_057 NM---DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEK
190 200 210 220 230
220 230 240 250 260 270
pF1KE5 LDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVAL
:.: :...: : ::.:::...... . :..:: .::.. : ..::...: .. :
NP_057 LQQYYIFIPSKFKDTYLVYILNELAGN----SFMIFCSTCNNTQRTALLLRNLGFTAIPL
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE5 HSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGR
:..:.:..:...: :::.. ::.:::::::::::: :.::.: . : : :::::::
NP_057 HGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR
300 310 320 330 340 350
340 350 360 370 380 390
pF1KE5 TARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIK
::::::.:.:::.:::::..: . ::. : ::: : ... ::... .: ..: ...
NP_057 TARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARME
360 370 380 390 400 410
400 410 420 430 440 450
pF1KE5 LEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGR
:. : ..:: . .. .. : . . ..: :.:.:.
NP_057 LRE-HGEKKK---RSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
420 430 440 450
460 470 480
pF1KE5 AGHKGRPPRTPSGSHSGPVPSQGLV
>>NP_060365 (OMIM: 616621) probable ATP-dependent RNA he (796 aa)
initn: 739 init1: 286 opt: 879 Z-score: 839.1 bits: 165.4 E(85289): 5.3e-40
Smith-Waterman score: 879; 33.0% identity (65.6% similar) in 488 aa overlap (4-480:220-697)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCI
: ...:: :.. .:.:::::.: .::
NP_060 KVKDRKKKKKKGQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACI
190 200 210 220 230 240
40 50 60 70 80 90
pF1KE5 PAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGI---FCLVLTPTRELAYQIAEQF
:. : :.: .:: ::.::::::.::.:..: : :::.:::::. :.
NP_060 PVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVT
250 260 270 280 290 300
100 110 120 130 140 150
pF1KE5 RVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLV
: :.. .. :. :::.:. .: : : ..::::::: :::.. .: ...:. :.
NP_060 RQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLI
310 320 330 340 350 360
160 170 180 190 200 210
pF1KE5 MDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQ
.:::::.:.. : ... :. .:::.:::::.:: ...: ... ..: ..
NP_060 LDEADRMLDEY---FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVN
370 380 390 400 410 420
220 230 240 250 260
pF1KE5 APVSTVEQLDQRYLLV-PEKVKD--AYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMM
. .... : :... . :.. : : .. :. : .: ...::.: : . . ..
NP_060 SNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDH----VMLFTQTKKQAHRMHIL
430 440 450 460 470 480
270 280 290 300 310 320
pF1KE5 LRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPG
: ... . ::. ..: .:. :: .::. ::.:::::.::::: :..::: . :.
NP_060 LGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN
490 500 510 520 530 540
330 340 350 360 370 380
pF1KE5 LPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQ
: :.::::::::::: :....:: . . .... : . : .. . . .:.. .
NP_060 TIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDK
550 560 570 580 590 600
390 400 410 420 430 440
pF1KE5 VNVVRRECE--IKLEAAHFDEKK---EINKRKQLILEGKDPDLEAKRKAELAKIKQKNRR
.. .... ..::: . . .. .:: :.:. .::. .. . : . .. :..:
NP_060 IEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQ---EPERSWFQTKEER
610 620 630 640 650
450 460 470 480
pF1KE5 FKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQGLV
:::. ..:.. . :.: : .....: . ..
NP_060 KKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAEERSQFEILKAQMFAERLAKRNR
660 670 680 690 700 710
NP_060 RAKRARAMPEEEPVRGPAKKQKQGKKSVFDEELTNTSKKALKQYRAGPSFEERKQLGLPH
720 730 740 750 760 770
>>NP_076977 (OMIM: 611665) ATP-dependent RNA helicase DD (881 aa)
initn: 717 init1: 214 opt: 757 Z-score: 722.9 bits: 144.0 E(85289): 1.6e-33
Smith-Waterman score: 757; 37.8% identity (63.3% similar) in 384 aa overlap (3-375:97-471)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGC
:: .::: . . . : : :::.:
NP_076 TFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKT
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE5 IPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPY--GIFCLVLTPTRELAYQIAEQF
::.::.:.: .. :.::::::: :.::....:. : :.:.:::::: : .
NP_076 IPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFT
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE5 RVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLV
. ::: ::: .:.:: : : : ..: ..:::::::. :. ..........:
NP_076 KELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVV
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE5 MDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQ
.::::::.:.: :. .:. :.: .:. .::.:::::: : :. . ..: . . .
NP_076 FDEADRLFEMG---FAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLD
250 260 270 280 290 300
220 230 240 250 260
pF1KE5 APVSTVEQLDQRYLLVPEKVKDAYLVHLIQ---RFQDEHEDWSIIIFTNTCKTCQILCMM
. .. ::: ..:: : .: : :.::.. : ::. ..:. : . . : .
NP_076 VDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQ-----TVVFVATKHHAEYLTEL
310 320 330 340 350
270 280 290 300 310 320
pF1KE5 LRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPG
: . ..: . : :::: . ::.::.:.:::::: .. :::.. :.
NP_076 LTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPA
360 370 380 390 400 410
330 340 350 360 370 380
pF1KE5 LPKIYIHRVGRTARAGRQGQAITLVTQ------YDIHLVHAIEEQIKKKLEEFSVEEAEV
:...:::::.:::::.: : .::. :.:: . . . :.: :
NP_076 KGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAGVD
420 430 440 450 460 470
390 400 410 420 430 440
pF1KE5 LQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNR
NP_076 GMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEM
480 490 500 510 520 530
>>NP_001104792 (OMIM: 611665) ATP-dependent RNA helicase (882 aa)
initn: 717 init1: 214 opt: 757 Z-score: 722.9 bits: 144.0 E(85289): 1.6e-33
Smith-Waterman score: 757; 37.8% identity (63.3% similar) in 384 aa overlap (3-375:97-471)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGC
:: .::: . . . : : :::.:
NP_001 TFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKT
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE5 IPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPY--GIFCLVLTPTRELAYQIAEQF
::.::.:.: .. :.::::::: :.::....:. : :.:.:::::: : .
NP_001 IPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFT
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE5 RVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLV
. ::: ::: .:.:: : : : ..: ..:::::::. :. ..........:
NP_001 KELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVV
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE5 MDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQ
.::::::.:.: :. .:. :.: .:. .::.:::::: : :. . ..: . . .
NP_001 FDEADRLFEMG---FAEQLQEIIARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLD
250 260 270 280 290 300
220 230 240 250 260
pF1KE5 APVSTVEQLDQRYLLVPEKVKDAYLVHLIQ---RFQDEHEDWSIIIFTNTCKTCQILCMM
. .. ::: ..:: : .: : :.::.. : ::. ..:. : . . : .
NP_001 VDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQ-----TVVFVATKHHAEYLTEL
310 320 330 340 350
270 280 290 300 310 320
pF1KE5 LRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPG
: . ..: . : :::: . ::.::.:.:::::: .. :::.. :.
NP_001 LTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSFPA
360 370 380 390 400 410
330 340 350 360 370 380
pF1KE5 LPKIYIHRVGRTARAGRQGQAITLVTQ------YDIHLVHAIEEQIKKKLEEFSVEEAEV
:...:::::.:::::.: : .::. :.:: . . . :.: :
NP_001 KGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAGVD
420 430 440 450 460 470
390 400 410 420 430 440
pF1KE5 LQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNR
NP_001 GMLGRVPQSVVDEEDSGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEM
480 490 500 510 520 530
>>NP_957518 (OMIM: 615428) probable ATP-dependent RNA he (406 aa)
initn: 1077 init1: 588 opt: 749 Z-score: 720.0 bits: 142.4 E(85289): 2.3e-33
Smith-Waterman score: 1007; 40.8% identity (66.5% similar) in 439 aa overlap (4-442:26-404)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILE
: .::... : : : ::: .:: .:. :: :.
NP_957 MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 GRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLG
::: .: :.::::::.::.::::. : : : .: ::::::::::.::.:::..::. .:
NP_957 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLL
... .::::.: ..:.: :..:::..::::::: :::.... :... ...::::::::.:
NP_957 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 EQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQ
.. :: .... :: ..: :.:.:::::.: ...:: : ..: ... .:::.
NP_957 NM---DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEK
190 200 210 220 230
220 230 240 250 260 270
pF1KE5 LDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVAL
:.: :...: : :.
NP_957 LQQYYIFIPSKFKS----------------------------------------------
240 250
280 290 300 310 320 330
pF1KE5 HSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGR
.:...: :::.. ::.:::::::::::: :.::.: . : : :::::::
NP_957 -------KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR
260 270 280 290 300
340 350 360 370 380 390
pF1KE5 TARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIK
::::::.:.:::.:::::..: . ::. : ::: : ... ::... .: ..: ...
NP_957 TARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARME
310 320 330 340 350 360
400 410 420 430 440 450
pF1KE5 LEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGR
:. : ..:: . .. .. : . . ..: :.:.:.
NP_957 LRE-HGEKKK---RSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
370 380 390 400
460 470 480
pF1KE5 AGHKGRPPRTPSGSHSGPVPSQGLV
>>NP_004389 (OMIM: 601235) probable ATP-dependent RNA he (875 aa)
initn: 447 init1: 223 opt: 701 Z-score: 669.8 bits: 134.2 E(85289): 1.4e-30
Smith-Waterman score: 701; 30.2% identity (61.3% similar) in 483 aa overlap (4-470:71-539)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCI
:... ::. .. .. . : .: :
NP_004 LKKPEWQVERESISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTI
50 60 70 80 90 100
40 50 60 70 80
pF1KE5 PAILEGRDCLGCAKTGSGKTAAFVLPILQKL------SEDPYGIFCLVLTPTRELAYQIA
:.:.: :: :::::::: ::..:.:. : : : :. :...::::::::
NP_004 GLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV--LIISPTRELAYQTF
110 120 130 140 150
90 100 110 120 130 140
pF1KE5 EQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIR
: .: .:: .. .:.:: :. .: ... . .... ::::: .:. . .: ..
NP_004 EVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQ
160 170 180 190 200 210
150 160 170 180 190 200
pF1KE5 FLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQP-FF
.::.:::::.:..: .: ..:.. .: .::::::::: : ....: :. ..: .
NP_004 MLVLDEADRILDMGFAD---TMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYV
220 230 240 250 260 270
210 220 230 240 250 260
pF1KE5 W-EAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILC
: . .: :: :.: :.. . : . .. : : . :.: ..:: : :
NP_004 WVHEKAKYSTPATLEQNYIVCELQQK----ISVLYSFLRSHLKKKSIVFFSSCKEVQYLY
280 290 300 310 320 330
270 280 290 300 310 320
pF1KE5 MMLRKFSFPTV---ALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVIN
.. .. : : :::. ..: .:. . .: . .:.:::.:.::::.:.:. :..
NP_004 RVFCRLR-PGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQ
340 350 360 370 380
330 340 350 360 370 380
pF1KE5 HNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVL
. : . ::::.::::: ..:.:. .. . .:. . : : ..:.... ...
NP_004 FDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLL-QKKVPVKEIKINPEKLI
390 400 410 420 430 440
390 400 410 420 430
pF1KE5 QILTQV-NVVRRECEIKLEAAH----FDEKKEINKRKQLILEGKDPDLEAKRKAELAKIK
.. .. ... .. ..: .: . . .. . : :... .: : : . ::
NP_004 DVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEYALSLGLAVAP
450 460 470 480 490 500
440 450 460 470 480
pF1KE5 QKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQGLV
. :: .:... .. . . : ::.::
NP_004 R--VRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMSILQKGGKRL
510 520 530 540 550 560
NP_004 EGTEHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFLDR
570 580 590 600 610 620
>>NP_006377 (OMIM: 608469) probable ATP-dependent RNA he (729 aa)
initn: 623 init1: 272 opt: 691 Z-score: 661.5 bits: 132.4 E(85289): 4.2e-30
Smith-Waterman score: 691; 37.5% identity (65.9% similar) in 352 aa overlap (24-365:193-539)
10 20 30 40 50
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKT
.:::.: .: : ::: .: :.::::::
NP_006 GDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKT
170 180 190 200 210 220
60 70 80 90 100
pF1KE5 AAFVLPILQKLSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGM
:..:: . .....:: : .::::.:::::: :. . :: ::. : ::
NP_006 LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA
230 240 250 260 270 280
110 120 130 140 150 160
pF1KE5 DMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVD
: .: : .. ::::::: : :.:..: .... .::.:::::.:..: : .
NP_006 PKGPQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVLDEADRMLDMG---FEPQ
290 300 310 320 330
170 180 190 200 210 220
pF1KE5 LEAILAAVPARRQTLLFSATLTDTLREL-QGLATNQPFFWEAQAPVSTVEQLDQRYLLVP
.. :. . ::::..::: .:.: . . . . .. .:. ... : .
NP_006 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCM
340 350 360 370 380 390
230 240 250 260 270 280
pF1KE5 EKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKER
:. :: :..:..... :.:. .:: :..: . :. : .:. ..:.. .:. .: ::
NP_006 ESEKDHKLIQLMEEIMAEKENKTII-FVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER
400 410 420 430 440 450
290 300 310 320 330 340
pF1KE5 FAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQ
.: .:.:. :::::::::::::. :. :::.. :. . :.::.:::::. .:
NP_006 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGT
460 470 480 490 500 510
350 360 370 380 390 400
pF1KE5 AITLVTQYDIH----LVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAH
: :. : ... :....::
NP_006 AYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGGGGGRSRYRTTSSANNPN
520 530 540 550 560 570
>>NP_001091974 (OMIM: 608469) probable ATP-dependent RNA (731 aa)
initn: 623 init1: 272 opt: 691 Z-score: 661.5 bits: 132.4 E(85289): 4.2e-30
Smith-Waterman score: 692; 32.3% identity (61.4% similar) in 461 aa overlap (24-475:193-633)
10 20 30 40 50
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKT
.:::.: .: : ::: .: :.::::::
NP_001 GDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKT
170 180 190 200 210 220
60 70 80 90 100
pF1KE5 AAFVLPILQKLSEDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGM
:..:: . .....:: : .::::.:::::: :. . :: ::. : ::
NP_001 LAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGA
230 240 250 260 270 280
110 120 130 140 150 160
pF1KE5 DMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVD
: .: : .. ::::::: : :.:..: .... .::.:::::.:..: : .
NP_001 PKGPQIRDLERGVEICIATPGRLIDFLESGKT-NLRRCTYLVLDEADRMLDMG---FEPQ
290 300 310 320 330
170 180 190 200 210 220
pF1KE5 LEAILAAVPARRQTLLFSATLTDTLREL-QGLATNQPFFWEAQAPVSTVEQLDQRYLLVP
.. :. . ::::..::: .:.: . . . . .. .:. ... : .
NP_001 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCM
340 350 360 370 380 390
230 240 250 260 270 280
pF1KE5 EKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKER
:. :: :..:..... :.:. . :::..: . :. : .:. ..:.. .:. .: ::
NP_001 ESEKDHKLIQLMEEIMAEKEN-KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPER
400 410 420 430 440 450
290 300 310 320 330 340
pF1KE5 FAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQ
.: .:.:. :::::::::::::. :. :::.. :. . :.::.:::::. .:
NP_001 DWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGT
460 470 480 490 500 510
350 360 370 380 390 400
pF1KE5 AITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEK
: :. : ... .: :: : .. . ...:.. . ...
NP_001 AYTFFTPGNLK---QARELIKVLEEANQAINPKLMQLVDH------------RGGGGGGG
520 530 540 550 560
410 420 430 440 450 460
pF1KE5 KEINKRKQLILEGKDPDLEAKRKAE--LAKIKQKNRRFKEKVEETLKRQKAGRAGHKGR-
: .: . ...:.: . . . : .:. .:: . . .. . ..:: :. .:
NP_001 KGGRSRYRTTSSANNPNLMYQDECDRRLRGVKDGGRRDSASYRDRSETDRAGYANGSGYG
570 580 590 600 610 620
470 480
pF1KE5 PPRTPSGSHSGPVPSQGLV
: . :...:
NP_001 SPNSAFGAQAGQYTYGQGTYGAAAYGTSSYTAQEYGAGTYGASSTTSTGRSSQSSSQQFS
630 640 650 660 670 680
>>XP_016879601 (OMIM: 613369) PREDICTED: ATP-dependent R (775 aa)
initn: 671 init1: 235 opt: 687 Z-score: 657.3 bits: 131.7 E(85289): 7.1e-30
Smith-Waterman score: 687; 33.8% identity (64.6% similar) in 390 aa overlap (2-379:90-473)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLG
..::..:.. :..: :. ::::.:
XP_016 EITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ
60 70 80 90 100 110
40 50 60 70 80
pF1KE5 CIPAILEGRDCLGCAKTGSGKTAAFVLPIL-----QKLSEDPYGIFCLVLTPTRELAYQI
.:. : ::: .: :::::::::::. :.: :: : : . ... ::::: ::
XP_016 GVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQI
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE5 AEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKI
. . .:: .:.. . :: .: :: :.. ..:. ::::: ::.... : .....
XP_016 HAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT-NLQRV
180 190 200 210 220 230
150 160 170 180 190 200
pF1KE5 RFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFF
.::.:::::....: : ....: . : :::::::::. ...: .:.
XP_016 SYLVFDEADRMFDMG---FEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIR
240 250 260 270 280 290
210 220 230 240 250 260
pF1KE5 WEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCM
.:. .. ... : .. . . : .:. . . :...:.. . . :
XP_016 V-VQGDIGEANE-DVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN
300 310 320 330 340 350
270 280 290 300 310 320
pF1KE5 MLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTP
:.. . ::. : :.:: ... ::.. .:.:::::.::::::....:::...
XP_016 NLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVA
360 370 380 390 400 410
330 340 350 360 370
pF1KE5 GLPKIYIHRVGRTARAGRQGQAITLVTQYDIH----LVHAIE---EQIKKKLEEFSVEEA
. ::.:::.:::..: : ::.: : . ::. .: ....:.: ......:
XP_016 RDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA
420 430 440 450 460 470
380 390 400 410 420 430
pF1KE5 EVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQK
XP_016 WFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAMGDRL
480 490 500 510 520 530
>>XP_016879600 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa)
initn: 671 init1: 235 opt: 687 Z-score: 656.2 bits: 131.8 E(85289): 8.3e-30
Smith-Waterman score: 687; 33.8% identity (64.6% similar) in 390 aa overlap (2-379:253-636)
10 20 30
pF1KE5 MAGFAELGLSSWLVEQCRQLGLKQPTPVQLG
..::..:.. :..: :. ::::.:
XP_016 EITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ
230 240 250 260 270 280
40 50 60 70 80
pF1KE5 CIPAILEGRDCLGCAKTGSGKTAAFVLPIL-----QKLSEDPYGIFCLVLTPTRELAYQI
.:. : ::: .: :::::::::::. :.: :: : : . ... ::::: ::
XP_016 GVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQI
290 300 310 320 330 340
90 100 110 120 130 140
pF1KE5 AEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKI
. . .:: .:.. . :: .: :: :.. ..:. ::::: ::.... : .....
XP_016 HAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT-NLQRV
350 360 370 380 390 400
150 160 170 180 190 200
pF1KE5 RFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFF
.::.:::::....: : ....: . : :::::::::. ...: .:.
XP_016 SYLVFDEADRMFDMG---FEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIR
410 420 430 440 450
210 220 230 240 250 260
pF1KE5 WEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCM
.:. .. ... : .. . . : .:. . . :...:.. . . :
XP_016 V-VQGDIGEANE-DVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELAN
460 470 480 490 500 510
270 280 290 300 310 320
pF1KE5 MLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTP
:.. . ::. : :.:: ... ::.. .:.:::::.::::::....:::...
XP_016 NLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVA
520 530 540 550 560 570
330 340 350 360 370
pF1KE5 GLPKIYIHRVGRTARAGRQGQAITLVTQYDIH----LVHAIE---EQIKKKLEEFSVEEA
. ::.:::.:::..: : ::.: : . ::. .: ....:.: ......:
XP_016 RDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNA
580 590 600 610 620 630
380 390 400 410 420 430
pF1KE5 EVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQK
XP_016 WFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAMGDRL
640 650 660 670 680 690
483 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:18:13 2016 done: Tue Nov 8 05:18:14 2016
Total Scan time: 7.860 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]