Result of FASTA (omim) for
pFN21AE5625
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5625, 493 aa
1>>>pF1KE5625 493 - 493 aa - 493 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7969+/-0.000356; mu= 16.1707+/- 0.022
mean_var=80.9851+/-15.847, 0's: 0 Z-trim(114.0): 31 B-trim: 0 in 0/55
Lambda= 0.142519
statistics sampled from 23576 (23600) to 23576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.277), width: 16
Scan time: 9.910
The best scores are: opt bits E(85289)
NP_001258691 (OMIM: 609707) tRNA-dihydrouridine(20 ( 493) 3260 680.2 3.7e-195
NP_060273 (OMIM: 609707) tRNA-dihydrouridine(20) s ( 493) 3260 680.2 3.7e-195
NP_001258692 (OMIM: 609707) tRNA-dihydrouridine(20 ( 458) 2455 514.6 2.3e-145
>>NP_001258691 (OMIM: 609707) tRNA-dihydrouridine(20) sy (493 aa)
initn: 3260 init1: 3260 opt: 3260 Z-score: 3624.7 bits: 680.2 E(85289): 3.7e-195
Smith-Waterman score: 3260; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
430 440 450 460 470 480
490
pF1KE5 ALGSGEESPLEGW
:::::::::::::
NP_001 ALGSGEESPLEGW
490
>>NP_060273 (OMIM: 609707) tRNA-dihydrouridine(20) synth (493 aa)
initn: 3260 init1: 3260 opt: 3260 Z-score: 3624.7 bits: 680.2 E(85289): 3.7e-195
Smith-Waterman score: 3260; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
430 440 450 460 470 480
490
pF1KE5 ALGSGEESPLEGW
:::::::::::::
NP_060 ALGSGEESPLEGW
490
>>NP_001258692 (OMIM: 609707) tRNA-dihydrouridine(20) sy (458 aa)
initn: 2455 init1: 2455 opt: 2455 Z-score: 2730.6 bits: 514.6 E(85289): 2.3e-145
Smith-Waterman score: 2955; 92.9% identity (92.9% similar) in 493 aa overlap (1-493:1-458)
10 20 30 40 50 60
pF1KE5 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MILNSLSLCYHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 STVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQY
::::::::::::::::::::::::::::
NP_001 STVDFVAPDDRVVFRTCEREQNRVVFQM--------------------------------
70 80
130 140 150 160 170 180
pF1KE5 STKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---GGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAI
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE5 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVM
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE5 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRL
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE5 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHAAQSSREICEAFGLGAFYEETTQELDAQQARLSAKTSEQTGEPAEDTSGVIKMAVKFD
270 280 290 300 310 320
370 380 390 400 410 420
pF1KE5 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRAYPAQITPKMCLLEWCRREKLAQPVYETVQRPLDRLFSSIVTVAEQKYQSTLWDKSKK
330 340 350 360 370 380
430 440 450 460 470 480
pF1KE5 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAEQAAAIVCLRSQGLPEGRLGEESPSLHKRKREAPDQDPGGPRAQELAQPGDLCKKPFV
390 400 410 420 430 440
490
pF1KE5 ALGSGEESPLEGW
:::::::::::::
NP_001 ALGSGEESPLEGW
450
493 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:17:38 2016 done: Tue Nov 8 05:17:39 2016
Total Scan time: 9.910 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]