FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5624, 475 aa
  1>>>pF1KE5624 475 - 475 aa - 475 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7060+/-0.00117; mu= 15.0677+/- 0.070
 mean_var=65.1978+/-12.784, 0's: 0 Z-trim(101.3): 24  B-trim: 0 in 0/49
 Lambda= 0.158839
 statistics sampled from 6468 (6474) to 6468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.563), E-opt: 0.2 (0.199), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS82917.1 NSUN7 gene_id:79730|Hs108|chr4         ( 475) 3082 715.7 2.6e-206
CCDS3461.2 NSUN7 gene_id:79730|Hs108|chr4          ( 718) 3024 702.5 3.8e-202


>>CCDS82917.1 NSUN7 gene_id:79730|Hs108|chr4              (475 aa)
 initn: 3082 init1: 3082 opt: 3082  Z-score: 3817.3  bits: 715.7 E(32554): 2.6e-206
Smith-Waterman score: 3082; 99.8% identity (100.0% similar) in 475 aa overlap (1-475:1-475)

               10        20        30        40        50        60
pF1KE5 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 TGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
              370       380       390       400       410       420

              430       440       450       460       470     
pF1KE5 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYSGTLLRQCL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYSGTLLRQCL
              430       440       450       460       470     

>>CCDS3461.2 NSUN7 gene_id:79730|Hs108|chr4               (718 aa)
 initn: 3022 init1: 3022 opt: 3024  Z-score: 3742.6  bits: 702.5 E(32554): 3.8e-202
Smith-Waterman score: 3024; 98.3% identity (98.7% similar) in 476 aa overlap (1-474:1-476)

               10        20        30        40        50        60
pF1KE5 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLNSTGELEFSNEEDPEIISQLTSLPLSGGKSSAGVPEKTGYPDSVYVMAANIFQGIRIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSCIFPSTTIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DHLSSLIIVMLYDFQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAALARCRIKHD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVKSVLHIDDKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLNMDDDVLMVN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 TGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTLFTKIGCKNIEILHEKFINIESK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGGISVDKLHVLAQQQYE
              370       380       390       400       410       420

              430       440       450       460         470        
pF1KE5 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPY--SGTLLRQCL   
       ::::::::::::::::::::::::::::::::::::::::::::::  :  .:  :    
CCDS34 QLTHAMKFTKAQAVVYCTCSVFPEENEAVVKKALEFQDLGNKGQPYRLSPPVLPLCSLKE
              430       440       450       460       470       480

CCDS34 IQLSTDKFFRMEPSEITNGCFLSILTRERDPSETVSVNDVLARAAAKGLLDGIELGKSSK
              490       500       510       520       530       540




475 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:16:44 2016 done: Tue Nov  8 05:16:45 2016
 Total Scan time:  2.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]