FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5617, 546 aa
  1>>>pF1KE5617 546 - 546 aa - 546 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1952+/-0.00107; mu= -2.8122+/- 0.065
 mean_var=311.2195+/-61.999, 0's: 0 Z-trim(113.0): 38  B-trim: 0 in 0/51
 Lambda= 0.072701
 statistics sampled from 13628 (13654) to 13628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.419), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS1752.1 PPM1G gene_id:5496|Hs108|chr2           ( 546) 3621 393.6 3.1e-109


>>CCDS1752.1 PPM1G gene_id:5496|Hs108|chr2                (546 aa)
 initn: 3621 init1: 3621 opt: 3621  Z-score: 2074.5  bits: 393.6 E(32554): 3.1e-109
Smith-Waterman score: 3621; 100.0% identity (100.0% similar) in 546 aa overlap (1-546:1-546)

               10        20        30        40        50        60
pF1KE5 MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNCIPELDSETAMFSVYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MGAYLSQPNTVKCSGDGVGAPRLPLPYGFSAMQGWRVSMEDAHNCIPELDSETAMFSVYD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAFLAIDAKLTTEEVIKELAQIAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GHGGEEVALYCAKYLPDIIKDQKAYKEGKLQKALEDAFLAIDAKLTTEEVIKELAQIAGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PTEDEDEKEKVADEDDVDNEEAALLHEEATMTIEELLTRYGQNCHKGPPHSKSGGGTGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PTEDEDEKEKVADEDDVDNEEAALLHEEATMTIEELLTRYGQNCHKGPPHSKSGGGTGEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 PGSQGLNGEAGPEDSTRETPSQENGPTAKAYTGFSSNSERGTEAGQVGEPGIPTGEAGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PGSQGLNGEAGPEDSTRETPSQENGPTAKAYTGFSSNSERGTEAGQVGEPGIPTGEAGPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 CSSASDKLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CSSASDKLPRVAKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYSSEEAENEEDEDDTEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AEEDDEEEEEEMMVPGMEGKEEPGSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AEEDDEEEEEEMMVPGMEGKEEPGSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 LPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 DQCLAPDTSGDGTGCDNMTCIIICFKPRNTAELQPESGKRKLEEVLSTEGAEENGNSDKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DQCLAPDTSGDGTGCDNMTCIIICFKPRNTAELQPESGKRKLEEVLSTEGAEENGNSDKK
              490       500       510       520       530       540

             
pF1KE5 KKAKRD
       ::::::
CCDS17 KKAKRD
             




546 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:11:56 2016 done: Tue Nov  8 05:11:56 2016
 Total Scan time:  3.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]