Result of FASTA (omim) for
pFN21AE5613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5613, 485 aa
1>>>pF1KE5613 485 - 485 aa - 485 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2749+/-0.000396; mu= 11.7414+/- 0.025
mean_var=228.5645+/-46.767, 0's: 0 Z-trim(120.4): 447 B-trim: 1796 in 1/55
Lambda= 0.084834
statistics sampled from 35036 (35587) to 35036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.417), width: 16
Scan time: 7.970
The best scores are: opt bits E(85289)
NP_068757 (OMIM: 612680) CUGBP Elav-like family me ( 485) 3280 414.4 3.5e-115
XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 485) 3280 414.4 3.5e-115
XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 484) 3261 412.1 1.8e-114
XP_006722899 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 382) 2501 319.0 1.5e-86
XP_006722900 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86
XP_006722901 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86
XP_011526475 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86
XP_011526476 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 370) 2478 316.1 1.1e-85
XP_016882600 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 346) 2329 297.9 3.1e-80
XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 2269 290.7 6.3e-78
XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496) 2255 289.0 2.1e-77
XP_011524388 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 495) 2253 288.7 2.4e-77
NP_001166144 (OMIM: 612680) CUGBP Elav-like family ( 409) 2046 263.3 9.2e-70
NP_443072 (OMIM: 612681) CUGBP Elav-like family me ( 481) 2033 261.8 3.1e-69
XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 2003 258.1 3.8e-68
XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1897 245.2 3.1e-64
XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 1895 244.9 3.7e-64
XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1883 243.4 1e-63
XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476) 1883 243.4 1e-63
XP_016881334 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 483) 1882 243.3 1.1e-63
XP_016881336 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1881 243.2 1.2e-63
XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1880 243.1 1.3e-63
XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1878 242.8 1.6e-63
NP_001317532 (OMIM: 612679) CUGBP Elav-like family ( 484) 1870 241.9 3.1e-63
XP_016881330 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 485) 1868 241.6 3.7e-63
XP_005258365 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 1865 241.2 4.8e-63
NP_001020259 (OMIM: 612679) CUGBP Elav-like family ( 484) 1851 239.5 1.6e-62
XP_011524387 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1719 223.4 1.2e-57
XP_011524381 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 506) 1705 221.7 3.8e-57
XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1702 221.3 4.6e-57
XP_011524385 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 505) 1702 221.3 5e-57
XP_011524383 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 505) 1697 220.7 7.6e-57
XP_011524386 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1694 220.3 9.8e-57
XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1690 219.8 1.3e-56
XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1688 219.5 1.5e-56
NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448) 1688 219.5 1.5e-56
XP_016881348 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 455) 1687 219.4 1.7e-56
XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1686 219.3 1.8e-56
XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1685 219.2 1.9e-56
XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1683 218.9 2.3e-56
XP_016881347 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1675 218.0 4.6e-56
XP_011524394 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 457) 1673 217.7 5.5e-56
XP_016881344 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1670 217.4 7e-56
NP_009116 (OMIM: 612678) CUGBP Elav-like family me ( 465) 1544 201.9 3.1e-51
NP_001278036 (OMIM: 612678) CUGBP Elav-like family ( 464) 1542 201.7 3.7e-51
NP_001278035 (OMIM: 612678) CUGBP Elav-like family ( 464) 1533 200.6 7.9e-51
XP_016881357 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 353) 1420 186.6 9.7e-47
XP_016881358 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1418 186.4 1.2e-46
XP_016881359 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1417 186.2 1.3e-46
XP_016881355 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 362) 1405 184.8 3.5e-46
>>NP_068757 (OMIM: 612680) CUGBP Elav-like family member (485 aa)
initn: 3280 init1: 3280 opt: 3280 Z-score: 2188.8 bits: 414.4 E(85289): 3.5e-115
Smith-Waterman score: 3280; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)
10 20 30 40 50 60
pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
430 440 450 460 470 480
pF1KE5 PGHPY
:::::
NP_068 PGHPY
>>XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav-like (485 aa)
initn: 3280 init1: 3280 opt: 3280 Z-score: 2188.8 bits: 414.4 E(85289): 3.5e-115
Smith-Waterman score: 3280; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485)
10 20 30 40 50 60
pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
430 440 450 460 470 480
pF1KE5 PGHPY
:::::
XP_006 PGHPY
>>XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav-like (484 aa)
initn: 2381 init1: 2381 opt: 3261 Z-score: 2176.3 bits: 412.1 E(85289): 1.8e-114
Smith-Waterman score: 3261; 99.8% identity (99.8% similar) in 485 aa overlap (1-485:1-484)
10 20 30 40 50 60
pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VKPADSESRGG-DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK
130 140 150 160 170
190 200 210 220 230 240
pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD
420 430 440 450 460 470
pF1KE5 PGHPY
:::::
XP_006 PGHPY
480
>>XP_006722899 (OMIM: 612680) PREDICTED: CUGBP Elav-like (382 aa)
initn: 2497 init1: 2497 opt: 2501 Z-score: 1674.7 bits: 319.0 E(85289): 1.5e-86
Smith-Waterman score: 2501; 99.5% identity (99.5% similar) in 375 aa overlap (113-485:8-382)
90 100 110 120 130 140
pF1KE5 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPG--MARPIQVKPADSESRGGRDRKLFVGM
:: ::::::::::::::::::::::::::
XP_006 MPAWRASPGRWMARPIQVKPADSESRGGRDRKLFVGM
10 20 30
150 160 170 180 190 200
pF1KE5 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE5 PGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE5 TSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE5 FAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAH
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE5 SVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQS
280 290 300 310 320 330
450 460 470 480
pF1KE5 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
:::::::::::::::::::::::::::::::::::::::::::::
XP_006 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
340 350 360 370 380
>>XP_006722900 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa)
initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86
Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371)
90 100 110 120 130 140
pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ
::::::::::::::::::::::::::::::
XP_006 MARPIQVKPADSESRGGRDRKLFVGMLNKQ
10 20 30
150 160 170 180 190 200
pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
280 290 300 310 320 330
450 460 470 480
pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
:::::::::::::::::::::::::::::::::::::::::
XP_006 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
340 350 360 370
>>XP_006722901 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa)
initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86
Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371)
90 100 110 120 130 140
pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ
::::::::::::::::::::::::::::::
XP_006 MARPIQVKPADSESRGGRDRKLFVGMLNKQ
10 20 30
150 160 170 180 190 200
pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
280 290 300 310 320 330
450 460 470 480
pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
:::::::::::::::::::::::::::::::::::::::::
XP_006 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
340 350 360 370
>>XP_011526475 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa)
initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86
Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371)
90 100 110 120 130 140
pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ
::::::::::::::::::::::::::::::
XP_011 MARPIQVKPADSESRGGRDRKLFVGMLNKQ
10 20 30
150 160 170 180 190 200
pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
280 290 300 310 320 330
450 460 470 480
pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
:::::::::::::::::::::::::::::::::::::::::
XP_011 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
340 350 360 370
>>XP_011526476 (OMIM: 612680) PREDICTED: CUGBP Elav-like (370 aa)
initn: 2381 init1: 2381 opt: 2478 Z-score: 1659.7 bits: 316.1 E(85289): 1.1e-85
Smith-Waterman score: 2478; 99.7% identity (99.7% similar) in 371 aa overlap (115-485:1-370)
90 100 110 120 130 140
pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ
::::::::::::::::: ::::::::::::
XP_011 MARPIQVKPADSESRGG-DRKLFVGMLNKQ
10 20
150 160 170 180 190 200
pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS
30 40 50 60 70 80
210 220 230 240 250 260
pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS
90 100 110 120 130 140
270 280 290 300 310 320
pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV
150 160 170 180 190 200
330 340 350 360 370 380
pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ
210 220 230 240 250 260
390 400 410 420 430 440
pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG
270 280 290 300 310 320
450 460 470 480
pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
:::::::::::::::::::::::::::::::::::::::::
XP_011 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY
330 340 350 360 370
>>XP_016882600 (OMIM: 612680) PREDICTED: CUGBP Elav-like (346 aa)
initn: 2329 init1: 2329 opt: 2329 Z-score: 1561.4 bits: 297.9 E(85289): 3.1e-80
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 346 aa overlap (140-485:1-346)
110 120 130 140 150 160
pF1KE5 KTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP
::::::::::::::::::::::::::::::
XP_016 MLNKQQSEEDVLRLFQPFGVIDECTVLRGP
10 20 30
170 180 190 200 210 220
pF1KE5 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE5 LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLP
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE5 ATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQS
160 170 180 190 200 210
350 360 370 380 390 400
pF1KE5 PTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQ
220 230 240 250 260 270
410 420 430 440 450 460
pF1KE5 EFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK
280 290 300 310 320 330
470 480
pF1KE5 RLKVQLKRPKDPGHPY
::::::::::::::::
XP_016 RLKVQLKRPKDPGHPY
340
>>XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav-like (494 aa)
initn: 1257 init1: 1257 opt: 2269 Z-score: 1520.0 bits: 290.7 E(85289): 6.3e-78
Smith-Waterman score: 2269; 72.1% identity (90.1% similar) in 463 aa overlap (26-485:37-494)
10 20 30 40 50
pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRH
: .: :. : ::: ::::::.:::::.
XP_011 TLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP--MKDHDAIKLFIGQIPRN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 LDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGM
:::::::::::.::.::::::::: .::::::::::::: :.::.:::.:::::::::::
XP_011 LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 ARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG
:::::::::::::: .:::::::::::::::.:: :::. :: :.:::.::::::.:::
XP_011 NRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP
:::::.:::.::::::.:::::::::::::::::::::::::::.::::::.::.:...:
XP_011 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 SLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPI
...::. :.::::::::::...... .:.::.: .::. ..::..:...::: :.:.
XP_011 -MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 APASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV
.:.:: .:: . . :::.. .:: .:::.:. : .:.:: :.:.:::. ::::::::.
XP_011 TPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFG
:. :. :..:::::.: :: :: :... :::::.. ::::::::::::::::::::::
XP_011 ADPLQQAYAGVQQYAAAYP-AAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 DTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK
:.:: ::::::::.::::::.::::::::::::::::::::::.::::::::::::::::
XP_011 DAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLK
430 440 450 460 470 480
480
pF1KE5 VQLKRPKDPGHPY
:::::::: ..::
XP_011 VQLKRPKDANRPY
490
485 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:09:32 2016 done: Tue Nov 8 05:09:33 2016
Total Scan time: 7.970 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]