FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5610, 584 aa
  1>>>pF1KE5610 584 - 584 aa - 584 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5518+/-0.000844; mu= 13.0549+/- 0.051
 mean_var=87.9394+/-17.211, 0's: 0 Z-trim(108.3): 12  B-trim: 7 in 1/50
 Lambda= 0.136767
 statistics sampled from 10137 (10143) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS1465.1 EIF2D gene_id:1939|Hs108|chr1           ( 584) 3871 773.9       0
CCDS55680.1 EIF2D gene_id:1939|Hs108|chr1          ( 460) 1902 385.3 8.8e-107


>>CCDS1465.1 EIF2D gene_id:1939|Hs108|chr1                (584 aa)
 initn: 3871 init1: 3871 opt: 3871  Z-score: 4128.6  bits: 773.9 E(32554):    0
Smith-Waterman score: 3871; 100.0% identity (100.0% similar) in 584 aa overlap (1-584:1-584)

               10        20        30        40        50        60
pF1KE5 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA
              490       500       510       520       530       540

              550       560       570       580    
pF1KE5 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK
              550       560       570       580    

>>CCDS55680.1 EIF2D gene_id:1939|Hs108|chr1               (460 aa)
 initn: 3037 init1: 1902 opt: 1902  Z-score: 2030.6  bits: 385.3 E(32554): 8.8e-107
Smith-Waterman score: 2793; 78.8% identity (78.8% similar) in 584 aa overlap (1-584:1-460)

               10        20        30        40        50        60
pF1KE5 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLWRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS55 PAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHL----
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE5 NKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHMTLEGEEENGEVHQAREDKSLSE
                                                                   
CCDS55 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KE5 APEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSC
                                                                   
CCDS55 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE5 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEP
        180       190       200       210       220       230      

              370       380       390       400       410       420
pF1KE5 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SPTSQTIQEGSREQPYHPPDIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAK
        240       250       260       270       280       290      

              430       440       450       460       470       480
pF1KE5 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQE
        300       310       320       330       340       350      

              490       500       510       520       530       540
pF1KE5 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAPGA
        360       370       380       390       400       410      

              550       560       570       580    
pF1KE5 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK
        420       430       440       450       460




584 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:07:37 2016 done: Tue Nov  8 05:07:37 2016
 Total Scan time:  3.610 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]