Result of FASTA (ccds) for
pFN21AE5603
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5603, 472 aa
1>>>pF1KE5603 472 - 472 aa - 472 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7123+/-0.000805; mu= 11.2088+/- 0.049
mean_var=97.6340+/-19.084, 0's: 0 Z-trim(109.7): 22 B-trim: 0 in 0/53
Lambda= 0.129800
statistics sampled from 11031 (11046) to 11031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.339), width: 16
Scan time: 3.130
The best scores are: opt bits E(32554)
CCDS65535.1 SPATA6 gene_id:54558|Hs108|chr1 ( 472) 3261 621.0 8.5e-178
CCDS551.1 SPATA6 gene_id:54558|Hs108|chr1 ( 488) 2653 507.1 1.6e-143
CCDS72787.1 SPATA6 gene_id:54558|Hs108|chr1 ( 474) 2046 393.5 2.6e-109
>>CCDS65535.1 SPATA6 gene_id:54558|Hs108|chr1 (472 aa)
initn: 3261 init1: 3261 opt: 3261 Z-score: 3305.5 bits: 621.0 E(32554): 8.5e-178
Smith-Waterman score: 3261; 99.6% identity (99.6% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KE5 MPKVKALQCALALEISSVTCPGVVPKDIEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
:::::::::::::::::::::::: :: ::::::::::::::::::::::::::::::::
CCDS65 MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 FEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SLRERFHSDWCSPSNCDEIHDRDERDLEKDDELELKRSLLCRDSAYDSDPEYSSCQQPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SLRERFHSDWCSPSNCDEIHDRDERDLEKDDELELKRSLLCRDSAYDSDPEYSSCQQPRG
370 380 390 400 410 420
430 440 450 460 470
pF1KE5 TFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSSASHTQESF
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSSASHTQESF
430 440 450 460 470
>>CCDS551.1 SPATA6 gene_id:54558|Hs108|chr1 (488 aa)
initn: 2636 init1: 2636 opt: 2653 Z-score: 2690.0 bits: 507.1 E(32554): 1.6e-143
Smith-Waterman score: 3219; 96.3% identity (96.3% similar) in 488 aa overlap (1-472:1-488)
10 20 30 40 50 60
pF1KE5 MPKVKALQCALALEISSVTCPGVVPKDIEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
:::::::::::::::::::::::: :: ::::::::::::::::::::::::::::::::
CCDS55 MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
310 320 330 340 350 360
370 380 390 400
pF1KE5 SLRERFHSDWCSPSNCDEIHDR----------------DERDLEKDDELELKRSLLCRDS
:::::::::::::::::::::: ::::::::::::::::::::::
CCDS55 SLRERFHSDWCSPSNCDEIHDRVKNVLKSHQAHQRHLYDERDLEKDDELELKRSLLCRDS
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE5 AYDSDPEYSSCQQPRGTFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AYDSDPEYSSCQQPRGTFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSS
430 440 450 460 470 480
470
pF1KE5 ASHTQESF
::::::::
CCDS55 ASHTQESF
>>CCDS72787.1 SPATA6 gene_id:54558|Hs108|chr1 (474 aa)
initn: 2526 init1: 2029 opt: 2046 Z-score: 2075.9 bits: 393.5 E(32554): 2.6e-109
Smith-Waterman score: 3085; 93.2% identity (93.4% similar) in 488 aa overlap (1-472:1-474)
10 20 30 40 50 60
pF1KE5 MPKVKALQCALALEISSVTCPGVVPKDIEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
:::::::::::::::::::::::: :: ::::::::::::::::::::::::::::::::
CCDS72 MPKVKALQCALALEISSVTCPGVVLKDKEDIYLSICVFGQYKKTQCVPATFPLVFNARMV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FEKVFPDAVDPGDVVTQLEYDTAVFELIQLVPPVGETLSTYDENTRDFMFPGPNQMSGHH
::::::::::::::::::: .::::::::::::::::::::::::::
CCDS72 FEKVFPDAVDPGDVVTQLE--------------LGETLSTYDENTRDFMFPGPNQMSGHH
70 80 90 100
130 140 150 160 170 180
pF1KE5 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DSNRQVTMRRISGLRGNAPRLEFSTTSVITECLISSRKCHTQDKFIYHLAPVEKSHGRLQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE5 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NRTSRSQKKKSKSPERSKYCINAKNYEQPTISSKSHSPSPYTKRRMCELSEDTRRRLAHL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE5 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLGPYEFKKETDKPPFVIRHVDPPSPRADTLLGSSGRDCERDGWSRVHNDHSHLGCCRPK
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE5 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DYKVIRTPHGRDFDDSLEKCEEYLSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRA
290 300 310 320 330 340
370 380 390 400
pF1KE5 SLRERFHSDWCSPSNCDEIHDR----------------DERDLEKDDELELKRSLLCRDS
:::::::::::::::::::::: ::::::::::::::::::::::
CCDS72 SLRERFHSDWCSPSNCDEIHDRVKNVLKSHQAHQRHLYDERDLEKDDELELKRSLLCRDS
350 360 370 380 390 400
410 420 430 440 450 460
pF1KE5 AYDSDPEYSSCQQPRGTFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 AYDSDPEYSSCQQPRGTFHLDDGEYWSNRAASYKGKSHRPIFENSMDKMYRNLYKKACSS
410 420 430 440 450 460
470
pF1KE5 ASHTQESF
::::::::
CCDS72 ASHTQESF
470
472 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:03:07 2016 done: Tue Nov 8 05:03:08 2016
Total Scan time: 3.130 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]