FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5586, 371 aa
  1>>>pF1KE5586 371 - 371 aa - 371 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1604+/-0.000734; mu= 13.1116+/- 0.044
 mean_var=90.7605+/-18.495, 0's: 0 Z-trim(111.3): 7  B-trim: 99 in 1/51
 Lambda= 0.134625
 statistics sampled from 12278 (12281) to 12278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.377), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS519.1 HPDL gene_id:84842|Hs108|chr1            ( 371) 2516 498.3 4.3e-141
CCDS53839.1 HPD gene_id:3242|Hs108|chr12           ( 354)  341 75.9 6.1e-14
CCDS9224.1 HPD gene_id:3242|Hs108|chr12            ( 393)  341 75.9 6.6e-14


>>CCDS519.1 HPDL gene_id:84842|Hs108|chr1                 (371 aa)
 initn: 2516 init1: 2516 opt: 2516  Z-score: 2646.5  bits: 498.3 E(32554): 4.3e-141
Smith-Waterman score: 2516; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KE5 MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVDGWRQLALRSGDAVFLVNEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVDGWRQLALRSGDAVFLVNEGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSVPVPPVRVRDAQGAATYAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSVPVPPVRVRDAQGAATYAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VSSPAGILSLTLLERAGYRGPFLPGFRPVSSAPGPGWVSRVDHLTLACTPGSSPTLLRWF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VSSPAGILSLTLLERAGYRGPFLPGFRPVSSAPGPGWVSRVDHLTLACTPGSSPTLLRWF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSIVPTLVLAESLPGATTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 HDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSIVPTLVLAESLPGATTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQQPGKERQIRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 QDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQQPGKERQIRAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 GHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGATGFGQGNIRALWQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGATGFGQGNIRALWQS
              310       320       330       340       350       360

              370 
pF1KE5 VQEQSARSQEA
       :::::::::::
CCDS51 VQEQSARSQEA
              370 

>>CCDS53839.1 HPD gene_id:3242|Hs108|chr12                (354 aa)
 initn: 312 init1: 158 opt: 341  Z-score: 363.8  bits: 75.9 E(32554): 6.1e-14
Smith-Waterman score: 365; 26.4% identity (55.7% similar) in 348 aa overlap (30-364:2-335)

               10        20        30        40            50      
pF1KE5 MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVD-GWRQLA---LRSGDAVFLV
                                    ::.::: : .. : :...   ...:  ::..
CCDS53                             MGFEPLAYRGLETGSREVVSHVIKQGKIVFVL
                                           10        20        30  

         60        70        80        90       100       110      
pF1KE5 NEGAGSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSVPVPPVRVRDAQGAA
       . . .  .  .:    .   .. .. :.: :    ...    : ..   :   .:  : .
CCDS53 SSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGKV
             40        50        60        70        80        90  

        120       130       140        150       160            170
pF1KE5 TYAVVSSPAGILSLTLLERAGYRGPFLPGFR-PVSSAPGPGWVSR-----VDHLTLACTP
        .::...  :  . ::.:. .: : ::::.. :.   :    . .     .::..     
CCDS53 KFAVLQT-YGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQPD
             100       110       120       130       140       150 

              180       190       200       210       220       230
pF1KE5 GSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSIVPTLVL
           .  .:.   : : :   :  .: ..  :...      ::  ..     ::   . .
CCDS53 QEMVSASEWYLKNLQF-HRFWSV-DDTQVHTEYSS------LRSIVVANYEESI--KMPI
             160        170        180             190         200 

              240       250       260       270       280       290
pF1KE5 AESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQQ
        :  ::   ...:.....  . : :.::..: : .:. : . .   : .::. :..::.:
CCDS53 NEPAPG--KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYKQ
               210       220       230       240       250         

                 300       310       320       330       340       
pF1KE5 ---PGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGAT
            :  .:..  ..   : .  ::.: :.  .:::.::: .  . :.:::.:::..  
CCDS53 LREKLKTAKIKVK-ENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNHQ
     260       270        280       290       300       310        

       350       360       370             
pF1KE5 GFGQGNIRALWQSVQEQSARSQEA            
       ::: ::. .:... .:.                   
CCDS53 GFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
      320       330       340       350    

>>CCDS9224.1 HPD gene_id:3242|Hs108|chr12                 (393 aa)
 initn: 312 init1: 158 opt: 341  Z-score: 363.1  bits: 75.9 E(32554): 6.6e-14
Smith-Waterman score: 365; 26.4% identity (55.7% similar) in 348 aa overlap (30-364:41-374)

                10        20        30        40            50     
pF1KE5  MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVD-GWRQLA---LRSGDAVFL
                                     ::.::: : .. : :...   ...:  ::.
CCDS92 PERGRFLHFHSVTFWVGNAKQATSFYCSKMGFEPLAYRGLETGSREVVSHVIKQGKIVFV
               20        30        40        50        60        70

          60        70        80        90       100       110     
pF1KE5 VNEGAGSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSVPVPPVRVRDAQGA
       .. . .  .  .:    .   .. .. :.: :    ...    : ..   :   .:  : 
CCDS92 LSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIMREPWVEQDKFGK
               80        90       100       110       120       130

         120       130       140        150       160              
pF1KE5 ATYAVVSSPAGILSLTLLERAGYRGPFLPGFR-PVSSAPGPGWVSR-----VDHLTLACT
       . .::...  :  . ::.:. .: : ::::.. :.   :    . .     .::..    
CCDS92 VKFAVLQT-YGDTTHTLVEKMNYIGQFLPGYEAPAFMDPLLPKLPKCSLEMIDHIVGNQP
               140       150       160       170       180         

     170       180       190       200       210       220         
pF1KE5 PGSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQAQPGSIVPTLV
            .  .:.   : : :   :  .: ..  :...      ::  ..     ::   . 
CCDS92 DQEMVSASEWYLKNLQF-HRFWSV-DDTQVHTEYSS------LRSIVVANYEESI--KMP
     190       200        210        220             230           

     230       240       250       260       270       280         
pF1KE5 LAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPPGAYYQ
       . :  ::   ...:.....  . : :.::..: : .:. : . .   : .::. :..::.
CCDS92 INEPAPG--KKKSQIQEYVDYNGGAGVQHIALKTEDIITAIRHLRERGLEFLSVPSTYYK
     240         250       260       270       280       290       

     290          300       310       320       330       340      
pF1KE5 Q---PGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTEDTFFLELIQRQGA
       :     :  .:..  ..   : .  ::.: :.  .:::.::: .  . :.:::.:::.. 
CCDS92 QLREKLKTAKIKVK-ENIDALEELKILVDYDEKGYLLQIFTKPVQDRPTLFLEVIQRHNH
       300       310        320       330       340       350      

        350       360       370             
pF1KE5 TGFGQGNIRALWQSVQEQSARSQEA            
        ::: ::. .:... .:.                   
CCDS92 QGFGAGNFNSLFKAFEEEQNLRGNLTNMETNGVVPGM
        360       370       380       390   




371 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:04:27 2016 done: Tue Nov  8 02:04:27 2016
 Total Scan time:  3.190 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]