Result of FASTA (omim) for
pFN21AE5579
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5579, 355 aa
1>>>pF1KE5579 355 - 355 aa - 355 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2141+/-0.000389; mu= 2.9222+/- 0.024
mean_var=141.5431+/-27.727, 0's: 0 Z-trim(116.7): 30 B-trim: 0 in 0/55
Lambda= 0.107803
statistics sampled from 28028 (28051) to 28028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.329), width: 16
Scan time: 5.700
The best scores are: opt bits E(85289)
NP_001129467 (OMIM: 300920) ataxin-3-like protein ( 355) 2353 377.4 2.7e-104
NP_004984 (OMIM: 109150,607047) ataxin-3 reference ( 361) 1612 262.1 1.3e-69
NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h ( 306) 1238 203.9 3.8e-52
NP_001121168 (OMIM: 109150,607047) ataxin-3 isofor ( 346) 1153 190.7 4e-48
NP_001158253 (OMIM: 109150,607047) ataxin-3 isofor ( 291) 1149 190.1 5.3e-48
NP_001158251 (OMIM: 109150,607047) ataxin-3 isofor ( 240) 851 143.7 4e-34
NP_001121169 (OMIM: 109150,607047) ataxin-3 isofor ( 310) 851 143.8 5e-34
NP_001158250 (OMIM: 109150,607047) ataxin-3 isofor ( 154) 768 130.7 2.1e-30
NP_001158252 (OMIM: 109150,607047) ataxin-3 isofor ( 182) 556 97.8 2e-20
NP_001158248 (OMIM: 109150,607047) ataxin-3 isofor ( 103) 473 84.8 9.4e-17
NP_001158246 (OMIM: 109150,607047) ataxin-3 isofor ( 88) 376 69.7 2.8e-12
>>NP_001129467 (OMIM: 300920) ataxin-3-like protein [Hom (355 aa)
initn: 2353 init1: 2353 opt: 2353 Z-score: 1993.5 bits: 377.4 E(85289): 2.7e-104
Smith-Waterman score: 2353; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 NREDEHLRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQEQKQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NREDEHLRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQEQKQQQQQ
250 260 270 280 290 300
310 320 330 340 350
pF1KE5 SDLPGHSSYLHERPTTSSRAIESDLSDDISEGTVQAAVDTILEIMRKNLKIKGEK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDLPGHSSYLHERPTTSSRAIESDLSDDISEGTVQAAVDTILEIMRKNLKIKGEK
310 320 330 340 350
>>NP_004984 (OMIM: 109150,607047) ataxin-3 reference iso (361 aa)
initn: 1431 init1: 1311 opt: 1612 Z-score: 1370.5 bits: 262.1 E(85289): 1.3e-69
Smith-Waterman score: 1612; 69.8% identity (85.9% similar) in 361 aa overlap (1-355:1-361)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_004 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
:::::: ::::.::::::::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_004 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
::.::.::.::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_004 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
: :..: ::: :..:.. ::.::.:: ::.: : .: :: :.::::.:::: :::::
NP_004 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
. :::. :: .:.::::::: : :::. .:: .. .::. .: .: ::::.:: .:.
NP_004 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
:::::.:: :.::. :::.::: :. :::.: .:: .:::: :: .:..:: .:.
NP_004 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
310 320 330 340 350 360
pF1KE5 K
:
NP_004 K
>>NP_109376 (OMIM: 109150,607047) ataxin-3 isoform h [Ho (306 aa)
initn: 1057 init1: 937 opt: 1238 Z-score: 1057.3 bits: 203.9 E(85289): 3.8e-52
Smith-Waterman score: 1238; 65.6% identity (83.9% similar) in 299 aa overlap (63-355:8-306)
40 50 60 70 80 90
pF1KE5 LASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEII
.::: ::::.::::::::::::: ::::.:
NP_109 MESIFHEKQPSGNMDDSGFFSIQVISNALKVWGLELI
10 20 30
100 110 120 130 140 150
pF1KE5 HFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFL
::.::::.: ::::::::::::::.::::.::.::.::::::::.:::::::: :: ::
NP_109 LFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE5 ARLQQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKV
:.:::..::.:::::::::::::::::.: :..: ::: :..:.. ::.::.:: ::.:
NP_109 AQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERV
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE5 SEESDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTS
: .: :: :.::::.:::: ::::: . :::. :: .:.::::::: : :::. .::
NP_109 LEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTS
160 170 180 190 200 210
280 290 300 310 320
pF1KE5 CVTPASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSD
.. .::. .: .: ::::.:: .:.:::::.:: :.::. :::.::: :. :::.:
NP_109 GTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGD
220 230 240 250 260 270
330 340 350
pF1KE5 DISE-GTVQAAVDTILEIMRKNLKIKGEK
.:: .:::: :: .:..:: .:.:
NP_109 AMSEEDMLQAAVTMSLETVRNDLKTEGKK
280 290 300
>>NP_001121168 (OMIM: 109150,607047) ataxin-3 isoform ad (346 aa)
initn: 972 init1: 852 opt: 1153 Z-score: 985.0 bits: 190.7 E(85289): 4e-48
Smith-Waterman score: 1480; 66.2% identity (82.0% similar) in 361 aa overlap (1-355:1-346)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
::: ::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_001 FLQ---------------VISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100
130 140 150 160 170 180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
::.::.::.::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_001 FTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
: :..: ::: :..:.. ::.::.:: ::.: : .: :: :.::::.:::: :::::
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
170 180 190 200 210 220
250 260 270 280 290
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
. :::. :: .:.::::::: : :::. .:: .. .::. .: .: ::::.:: .:.
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
:::::.:: :.::. :::.::: :. :::.: .:: .:::: :: .:..:: .:.
NP_001 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
290 300 310 320 330 340
pF1KE5 K
:
NP_001 K
>>NP_001158253 (OMIM: 109150,607047) ataxin-3 isoform y (291 aa)
initn: 965 init1: 845 opt: 1149 Z-score: 982.8 bits: 190.1 E(85289): 5.3e-48
Smith-Waterman score: 1149; 64.1% identity (82.9% similar) in 287 aa overlap (75-355:5-291)
50 60 70 80 90 100
pF1KE5 RMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGI
: .::::::: ::::.: ::.::::.: :
NP_001 MESIFHEKVISNALKVWGLELILFNSPEYQRLRI
10 20 30
110 120 130 140 150 160
pF1KE5 DPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFV
:::::::::::::.::::.::.::.::::::::.:::::::: :: :::.:::..::.::
NP_001 DPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 VKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQ
:::::::::::::::.: :..: ::: :..:.. ::.::.:: ::.: : .: :: :.
NP_001 VKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDE
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 DEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKI
::::.:::: ::::: . :::. :: .:.::::::: : :::. .:: .. .::. .:
NP_001 DEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKR
160 170 180 190 200 210
290 300 310 320 330
pF1KE5 KEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAV
.: ::::.:: .:.:::::.:: :.::. :::.::: :. :::.: .:: .::::
NP_001 REAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAV
220 230 240 250 260 270
340 350
pF1KE5 DTILEIMRKNLKIKGEK
:: .:..:: .:.:
NP_001 TMSLETVRNDLKTEGKK
280 290
>>NP_001158251 (OMIM: 109150,607047) ataxin-3 isoform r (240 aa)
initn: 670 init1: 550 opt: 851 Z-score: 733.7 bits: 143.7 E(85289): 4e-34
Smith-Waterman score: 851; 60.6% identity (80.9% similar) in 236 aa overlap (126-355:5-240)
100 110 120 130 140 150
pF1KE5 NPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARL
: ..::::::::.:::::::: :: :::.:
NP_001 MESIFHEKWFNLNSLLTGPELISDTYLALFLAQL
10 20 30
160 170 180 190 200 210
pF1KE5 QQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEE
::..::.:::::::::::::::::.: :..: ::: :..:.. ::.::.:: ::.: :
NP_001 QQEGYSIFVVKGDLPDCEADQLLQMIRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEA
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE5 SDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVT
.: :: :.::::.:::: ::::: . :::. :: .:.::::::: : :::. .:: ..
NP_001 NDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTN
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE5 PASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDIS
.::. .: .: ::::.:: .:.:::::.:: :.::. :::.::: :. :::.: .:
NP_001 LTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMS
160 170 180 190 200 210
340 350
pF1KE5 E-GTVQAAVDTILEIMRKNLKIKGEK
: .:::: :: .:..:: .:.:
NP_001 EEDMLQAAVTMSLETVRNDLKTEGKK
220 230 240
>>NP_001121169 (OMIM: 109150,607047) ataxin-3 isoform e (310 aa)
initn: 783 init1: 549 opt: 851 Z-score: 731.9 bits: 143.8 E(85289): 5e-34
Smith-Waterman score: 1200; 58.4% identity (72.6% similar) in 361 aa overlap (1-355:1-310)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
:::::: ::::.::::::
NP_001 FLQQPSGNMDDSGFFSIQ------------------------------------------
70
130 140 150 160 170 180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
::::::::.:::::::: :: :::.:::..::.:::::::::::::::::.
NP_001 ---------WFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQM
80 90 100 110 120
190 200 210 220 230 240
pF1KE5 ISVEEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALELSRQET
: :..: ::: :..:.. ::.::.:: ::.: : .: :: :.::::.:::: :::::
NP_001 IRVQQMHRPKLIGEELAQLKEQRVHKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEI
130 140 150 160 170 180
250 260 270 280 290
pF1KE5 NREDEH--LRSTIELSMQGSSGNTSQDLPKTSCVTPASEQPKKIKEDYFEKHQQ---EQK
. :::. :: .:.::::::: : :::. .:: .. .::. .: .: ::::.:: .:.
NP_001 DMEDEEADLRRAIQLSMQGSSRNISQDMTQTSGTNLTSEELRKRREAYFEKQQQKQQQQQ
190 200 210 220 230 240
300 310 320 330 340 350
pF1KE5 QQQQQSDLPGHSSYLHERPTTSSRAIESDLSDDISE-GTVQAAVDTILEIMRKNLKIKGE
:::::.:: :.::. :::.::: :. :::.: .:: .:::: :: .:..:: .:.
NP_001 QQQQQGDLSGQSSHPCERPATSSGALGSDLGDAMSEEDMLQAAVTMSLETVRNDLKTEGK
250 260 270 280 290 300
pF1KE5 K
:
NP_001 K
310
>>NP_001158250 (OMIM: 109150,607047) ataxin-3 isoform o (154 aa)
initn: 762 init1: 762 opt: 768 Z-score: 667.0 bits: 130.7 E(85289): 2.1e-30
Smith-Waterman score: 768; 85.3% identity (94.6% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
:::::: ::::.::::::::::::: ::::.: ::.::::.: ::::::::::::::.::
NP_001 FLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLPDCEADQLLQI
::.::.::.
NP_001 FTVRKLGKQTAAKAATAAAAAAAGGPIRTEFTSM
130 140 150
>>NP_001158252 (OMIM: 109150,607047) ataxin-3 isoform u (182 aa)
initn: 375 init1: 255 opt: 556 Z-score: 487.6 bits: 97.8 E(85289): 2e-20
Smith-Waterman score: 556; 54.4% identity (76.9% similar) in 182 aa overlap (180-355:1-182)
150 160 170 180 190 200
pF1KE5 NFLARLQQQAYSVFVVKGDLPDCEADQLLQIISVEEMDTPKLNGKKLVKQKEHRVYKTVL
.: :..: ::: :..:.. ::.::.:: :
NP_001 MIRVQQMHRPKLIGEELAQLKEQRVHKTDL
10 20 30
210 220 230 240 250 260
pF1KE5 EKVSEESDESGTSDQDEEDFQRALELSRQETNREDEH--LRSTIELSMQGSSGNTSQDLP
:.: : .: :: :.::::.:::: ::::: . :::. :: .:.::::::: : :::.
NP_001 ERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNISQDMT
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE5 KTSCVTPASEQPKKIKEDYFEKHQQ---EQKQQQQQSDLPGHSSYLHERPTTSSRAIESD
.:: .. .::. .: .: ::::.:: .:.:::::.:: :.::. :::.::: :. ::
NP_001 QTSGTNLTSEELRKRREAYFEKQQQKQQQQQQQQQQGDLSGQSSHPCERPATSSGALGSD
100 110 120 130 140 150
330 340 350
pF1KE5 LSDDISE-GTVQAAVDTILEIMRKNLKIKGEK
:.: .:: .:::: :: .:..:: .:.:
NP_001 LGDAMSEEDMLQAAVTMSLETVRNDLKTEGKK
160 170 180
>>NP_001158248 (OMIM: 109150,607047) ataxin-3 isoform g (103 aa)
initn: 467 init1: 467 opt: 473 Z-score: 421.8 bits: 84.8 E(85289): 9.4e-17
Smith-Waterman score: 473; 84.3% identity (94.0% similar) in 83 aa overlap (1-83:1-83)
10 20 30 40 50 60
pF1KE5 MDFIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLA
:. :::::::: :::::::::::::::::::::.::::::::::::::::::::::.: .
NP_001 MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FLQQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHW
:::::: ::::.::::::. ..:
NP_001 FLQQPSGNMDDSGFFSIQTAAKAATAAAAAAAGGPIRTEFTSM
70 80 90 100
355 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 02:02:05 2016 done: Tue Nov 8 02:02:06 2016
Total Scan time: 5.700 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]