FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5552, 417 aa
  1>>>pF1KE5552 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5450+/-0.00095; mu= -1.8554+/- 0.057
 mean_var=227.8598+/-46.083, 0's: 0 Z-trim(112.7): 20  B-trim: 0 in 0/51
 Lambda= 0.084965
 statistics sampled from 13452 (13458) to 13452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.413), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS2917.1 PPP4R2 gene_id:151987|Hs108|chr3        ( 417) 2732 347.6 1.3e-95


>>CCDS2917.1 PPP4R2 gene_id:151987|Hs108|chr3             (417 aa)
 initn: 2732 init1: 2732 opt: 2732  Z-score: 1829.8  bits: 347.6 E(32554): 1.3e-95
Smith-Waterman score: 2732; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KE5 MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETMIQWSQFKGYFIFKLEKVMDDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETMIQWSQFKGYFIFKLEKVMDDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RTSAPEPRGPPNPNVEYIPFDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 RTSAPEPRGPPNPNVEYIPFDEMKERILKIVTGFNGIPFTIQRLCELLTDPRRNYTGTDK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FLRGVEKNVMVVSCVYPSSEKNNSNSLNRMNGVMFPGNSPSYTERSNINGPGTPRPLNRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 FLRGVEKNVMVVSCVYPSSEKNNSNSLNRMNGVMFPGNSPSYTERSNINGPGTPRPLNRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KVSLSAPMTTNGLPESTDSKEANLQQNEEKNHSDSSTSESEVSSVSPLKNKHPDEDAVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KVSLSAPMTTNGLPESTDSKEANLQQNEEKNHSDSSTSESEVSSVSPLKNKHPDEDAVEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EGHEVKRLRFDKEGEVRETASQTTSSEISSVMVGETEASSSSQDKDKDSRCTRQHCTEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EGHEVKRLRFDKEGEVRETASQTTSSEISSVMVGETEASSSSQDKDKDSRCTRQHCTEED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 EEEDEEEEEESFMTSREMIPERKNQEKESDDALTVNEETSEENNQMEESDVSQAEKDLLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EEEDEEEEEESFMTSREMIPERKNQEKESDDALTVNEETSEENNQMEESDVSQAEKDLLH
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KE5 SEGSENEGPVSSSSSDCRETEELVGSNSSKTGEILSESSMENDDEATEVTDEPMEQD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SEGSENEGPVSSSSSDCRETEELVGSNSSKTGEILSESSMENDDEATEVTDEPMEQD
              370       380       390       400       410       




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:45:22 2016 done: Tue Nov  8 01:45:23 2016
 Total Scan time:  3.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]