Result of FASTA (omim) for
pFN21AE5549
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5549, 400 aa
1>>>pF1KE5549 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2845+/-0.000363; mu= 12.5664+/- 0.023
mean_var=85.4191+/-17.388, 0's: 0 Z-trim(115.2): 58 B-trim: 574 in 2/49
Lambda= 0.138770
statistics sampled from 25440 (25500) to 25440 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.299), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
NP_877590 (OMIM: 605184) polyadenylate-binding pro ( 400) 2666 543.6 3.2e-154
NP_006442 (OMIM: 605184) polyadenylate-binding pro ( 479) 2610 532.4 9e-151
XP_016864445 (OMIM: 605184) PREDICTED: polyadenyla ( 367) 2440 498.3 1.3e-140
NP_899152 (OMIM: 605184) polyadenylate-binding pro ( 367) 2440 498.3 1.3e-140
XP_005248287 (OMIM: 605184) PREDICTED: polyadenyla ( 367) 2440 498.3 1.3e-140
XP_011524580 (OMIM: 613178) PREDICTED: CBP80/20-de ( 575) 222 54.3 8.7e-07
XP_016881591 (OMIM: 613178) PREDICTED: CBP80/20-de ( 600) 222 54.3 9.1e-07
XP_006722652 (OMIM: 613178) PREDICTED: CBP80/20-de ( 600) 222 54.3 9.1e-07
XP_006722651 (OMIM: 613178) PREDICTED: CBP80/20-de ( 600) 222 54.3 9.1e-07
NP_001135869 (OMIM: 613178) CBP80/20-dependent tra ( 600) 222 54.3 9.1e-07
XP_006722650 (OMIM: 613178) PREDICTED: CBP80/20-de ( 600) 222 54.3 9.1e-07
XP_005258449 (OMIM: 613178) PREDICTED: CBP80/20-de ( 616) 222 54.3 9.3e-07
XP_016881589 (OMIM: 613178) PREDICTED: CBP80/20-de ( 616) 222 54.3 9.3e-07
XP_016881590 (OMIM: 613178) PREDICTED: CBP80/20-de ( 616) 222 54.3 9.3e-07
XP_006722646 (OMIM: 613178) PREDICTED: CBP80/20-de ( 616) 222 54.3 9.3e-07
XP_011524581 (OMIM: 613178) PREDICTED: CBP80/20-de ( 598) 215 52.9 2.4e-06
NP_055587 (OMIM: 613178) CBP80/20-dependent transl ( 598) 215 52.9 2.4e-06
XP_006722649 (OMIM: 613178) PREDICTED: CBP80/20-de ( 614) 215 52.9 2.4e-06
XP_016858197 (OMIM: 603929) PREDICTED: eukaryotic (1305) 193 48.7 0.0001
XP_016858195 (OMIM: 603929) PREDICTED: eukaryotic (1361) 193 48.7 0.0001
XP_016858193 (OMIM: 603929) PREDICTED: eukaryotic (1536) 193 48.7 0.00011
XP_016858192 (OMIM: 603929) PREDICTED: eukaryotic (1537) 193 48.7 0.00012
XP_016858190 (OMIM: 603929) PREDICTED: eukaryotic (1584) 193 48.7 0.00012
NP_003751 (OMIM: 603929) eukaryotic translation in (1585) 193 48.7 0.00012
XP_016858189 (OMIM: 603929) PREDICTED: eukaryotic (1585) 193 48.7 0.00012
XP_016858186 (OMIM: 603929) PREDICTED: eukaryotic (1595) 193 48.7 0.00012
XP_016858174 (OMIM: 603929) PREDICTED: eukaryotic (1630) 193 48.7 0.00012
XP_016858171 (OMIM: 603929) PREDICTED: eukaryotic (1633) 193 48.7 0.00012
XP_016858196 (OMIM: 603929) PREDICTED: eukaryotic (1342) 191 48.3 0.00013
XP_016858194 (OMIM: 603929) PREDICTED: eukaryotic (1398) 191 48.3 0.00014
XP_016858191 (OMIM: 603929) PREDICTED: eukaryotic (1562) 191 48.3 0.00015
NP_001185730 (OMIM: 603929) eukaryotic translation (1621) 191 48.3 0.00016
XP_016858182 (OMIM: 603929) PREDICTED: eukaryotic (1622) 191 48.3 0.00016
XP_011540676 (OMIM: 603929) PREDICTED: eukaryotic (1622) 191 48.3 0.00016
XP_011540677 (OMIM: 603929) PREDICTED: eukaryotic (1622) 191 48.3 0.00016
XP_016858181 (OMIM: 603929) PREDICTED: eukaryotic (1622) 191 48.3 0.00016
XP_016858164 (OMIM: 603929) PREDICTED: eukaryotic (1667) 191 48.3 0.00016
XP_016858163 (OMIM: 603929) PREDICTED: eukaryotic (1670) 191 48.3 0.00016
>>NP_877590 (OMIM: 605184) polyadenylate-binding protein (400 aa)
initn: 2666 init1: 2666 opt: 2666 Z-score: 2889.7 bits: 543.6 E(85289): 3.2e-154
Smith-Waterman score: 2666; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)
10 20 30 40 50 60
pF1KE5 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
310 320 330 340 350 360
370 380 390 400
pF1KE5 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
::::::::::::::::::::::::::::::::::::::::
NP_877 GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
370 380 390 400
>>NP_006442 (OMIM: 605184) polyadenylate-binding protein (479 aa)
initn: 2610 init1: 2610 opt: 2610 Z-score: 2827.8 bits: 532.4 E(85289): 9e-151
Smith-Waterman score: 2610; 100.0% identity (100.0% similar) in 392 aa overlap (9-400:88-479)
10 20 30
pF1KE5 MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ
::::::::::::::::::::::::::::::
NP_006 PLRQPRTTPPPGAQCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQ
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE5 VVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFE
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE5 TEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE5 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQ
240 250 260 270 280 290
220 230 240 250 260 270
pF1KE5 VGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDAN
300 310 320 330 340 350
280 290 300 310 320 330
pF1KE5 CSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADP
360 370 380 390 400 410
340 350 360 370 380 390
pF1KE5 DYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKR
420 430 440 450 460 470
400
pF1KE5 KQ
::
NP_006 KQ
>>XP_016864445 (OMIM: 605184) PREDICTED: polyadenylate-b (367 aa)
initn: 2440 init1: 2440 opt: 2440 Z-score: 2645.7 bits: 498.3 E(85289): 1.3e-140
Smith-Waterman score: 2440; 100.0% identity (100.0% similar) in 367 aa overlap (34-400:1-367)
10 20 30 40 50 60
pF1KE5 GFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
::::::::::::::::::::::::::::::
XP_016 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
10 20 30
70 80 90 100 110 120
pF1KE5 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
280 290 300 310 320 330
370 380 390 400
pF1KE5 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
:::::::::::::::::::::::::::::::::::::
XP_016 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
340 350 360
>>NP_899152 (OMIM: 605184) polyadenylate-binding protein (367 aa)
initn: 2440 init1: 2440 opt: 2440 Z-score: 2645.7 bits: 498.3 E(85289): 1.3e-140
Smith-Waterman score: 2440; 100.0% identity (100.0% similar) in 367 aa overlap (34-400:1-367)
10 20 30 40 50 60
pF1KE5 GFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
::::::::::::::::::::::::::::::
NP_899 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
10 20 30
70 80 90 100 110 120
pF1KE5 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_899 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
280 290 300 310 320 330
370 380 390 400
pF1KE5 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
:::::::::::::::::::::::::::::::::::::
NP_899 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
340 350 360
>>XP_005248287 (OMIM: 605184) PREDICTED: polyadenylate-b (367 aa)
initn: 2440 init1: 2440 opt: 2440 Z-score: 2645.7 bits: 498.3 E(85289): 1.3e-140
Smith-Waterman score: 2440; 100.0% identity (100.0% similar) in 367 aa overlap (34-400:1-367)
10 20 30 40 50 60
pF1KE5 GFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
::::::::::::::::::::::::::::::
XP_005 MAKPQVVVAPVLMSKLSVNAPEFYPSGYSS
10 20 30
70 80 90 100 110 120
pF1KE5 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEV
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTD
280 290 300 310 320 330
370 380 390 400
pF1KE5 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
:::::::::::::::::::::::::::::::::::::
XP_005 LSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ
340 350 360
>>XP_011524580 (OMIM: 613178) PREDICTED: CBP80/20-depend (575 aa)
initn: 175 init1: 118 opt: 222 Z-score: 242.8 bits: 54.3 E(85289): 8.7e-07
Smith-Waterman score: 263; 21.7% identity (58.2% similar) in 304 aa overlap (7-298:273-555)
10 20 30
pF1KE5 MSDGFDRAPEQTRPL---RAPP--SSQDKIPQQNSE
:.:. :. : :: :. .. . ..
XP_011 HRNAKETMTIENPKLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKD
250 260 270 280 290 300
40 50 60 70 80
pF1KE5 SAMA-----KPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDF
: . .:.... ..: : :. . : .. ... .. .
XP_011 SILPERIGERPKITLLQSSKDRLRRRLKEKVPDEVAVETTTPQQN------KMDKLIE-I
310 320 330 340 350
90 100 110 120 130 140
pF1KE5 LNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL
:: . .. .. .:.. : : .. ..... : :.:. :::.:.: .:.. .:.::. .
XP_011 LNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKM
360 370 380 390 400 410
150 160 170 180 190 200
pF1KE5 SHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKG
. .. .. .::.:::. . .. :... . : .:. .:. :: :.. .. ..
XP_011 ALFMV---EGTKFRSLLLNMLQKDFTVREELQQQD---VERWLGFITFLCEVFGTM--RS
420 430 440 450 460
210 220 230 240 250 260
pF1KE5 TNGQVTRADILQVG--LRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDME
..:. :. . . :::::.. .. .: ..: :. :: .::. : :
XP_011 STGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM----MT
470 480 490 500 510 520
270 280 290 300 310 320
pF1KE5 EIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPT
:.. .. .: . : ....::...::....:
XP_011 ELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
530 540 550 560 570
330 340 350 360 370 380
pF1KE5 FYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIE
>>XP_016881591 (OMIM: 613178) PREDICTED: CBP80/20-depend (600 aa)
initn: 175 init1: 118 opt: 222 Z-score: 242.5 bits: 54.3 E(85289): 9.1e-07
Smith-Waterman score: 263; 21.7% identity (58.2% similar) in 304 aa overlap (7-298:298-580)
10 20 30
pF1KE5 MSDGFDRAPEQTRPL---RAPP--SSQDKIPQQNSE
:.:. :. : :: :. .. . ..
XP_016 HRNAKETMTIENPKLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKD
270 280 290 300 310 320
40 50 60 70 80
pF1KE5 SAMA-----KPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDF
: . .:.... ..: : :. . : .. ... .. .
XP_016 SILPERIGERPKITLLQSSKDRLRRRLKEKVPDEVAVETTTPQQN------KMDKLIE-I
330 340 350 360 370 380
90 100 110 120 130 140
pF1KE5 LNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL
:: . .. .. .:.. : : .. ..... : :.:. :::.:.: .:.. .:.::. .
XP_016 LNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKM
390 400 410 420 430 440
150 160 170 180 190 200
pF1KE5 SHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKG
. .. .. .::.:::. . .. :... . : .:. .:. :: :.. .. ..
XP_016 ALFMV---EGTKFRSLLLNMLQKDFTVREELQQQD---VERWLGFITFLCEVFGTM--RS
450 460 470 480 490
210 220 230 240 250 260
pF1KE5 TNGQVTRADILQVG--LRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDME
..:. :. . . :::::.. .. .: ..: :. :: .::. : :
XP_016 STGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM----MT
500 510 520 530 540
270 280 290 300 310 320
pF1KE5 EIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPT
:.. .. .: . : ....::...::....:
XP_016 ELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
550 560 570 580 590 600
330 340 350 360 370 380
pF1KE5 FYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIE
>>XP_006722652 (OMIM: 613178) PREDICTED: CBP80/20-depend (600 aa)
initn: 175 init1: 118 opt: 222 Z-score: 242.5 bits: 54.3 E(85289): 9.1e-07
Smith-Waterman score: 263; 21.7% identity (58.2% similar) in 304 aa overlap (7-298:298-580)
10 20 30
pF1KE5 MSDGFDRAPEQTRPL---RAPP--SSQDKIPQQNSE
:.:. :. : :: :. .. . ..
XP_006 HRNAKETMTIENPKLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKD
270 280 290 300 310 320
40 50 60 70 80
pF1KE5 SAMA-----KPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDF
: . .:.... ..: : :. . : .. ... .. .
XP_006 SILPERIGERPKITLLQSSKDRLRRRLKEKVPDEVAVETTTPQQN------KMDKLIE-I
330 340 350 360 370 380
90 100 110 120 130 140
pF1KE5 LNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL
:: . .. .. .:.. : : .. ..... : :.:. :::.:.: .:.. .:.::. .
XP_006 LNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKM
390 400 410 420 430 440
150 160 170 180 190 200
pF1KE5 SHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKG
. .. .. .::.:::. . .. :... . : .:. .:. :: :.. .. ..
XP_006 ALFMV---EGTKFRSLLLNMLQKDFTVREELQQQD---VERWLGFITFLCEVFGTM--RS
450 460 470 480 490
210 220 230 240 250 260
pF1KE5 TNGQVTRADILQVG--LRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDME
..:. :. . . :::::.. .. .: ..: :. :: .::. : :
XP_006 STGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM----MT
500 510 520 530 540
270 280 290 300 310 320
pF1KE5 EIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPT
:.. .. .: . : ....::...::....:
XP_006 ELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
550 560 570 580 590 600
330 340 350 360 370 380
pF1KE5 FYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIE
>>XP_006722651 (OMIM: 613178) PREDICTED: CBP80/20-depend (600 aa)
initn: 175 init1: 118 opt: 222 Z-score: 242.5 bits: 54.3 E(85289): 9.1e-07
Smith-Waterman score: 263; 21.7% identity (58.2% similar) in 304 aa overlap (7-298:298-580)
10 20 30
pF1KE5 MSDGFDRAPEQTRPL---RAPP--SSQDKIPQQNSE
:.:. :. : :: :. .. . ..
XP_006 HRNAKETMTIENPKLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKD
270 280 290 300 310 320
40 50 60 70 80
pF1KE5 SAMA-----KPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDF
: . .:.... ..: : :. . : .. ... .. .
XP_006 SILPERIGERPKITLLQSSKDRLRRRLKEKVPDEVAVETTTPQQN------KMDKLIE-I
330 340 350 360 370 380
90 100 110 120 130 140
pF1KE5 LNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL
:: . .. .. .:.. : : .. ..... : :.:. :::.:.: .:.. .:.::. .
XP_006 LNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKM
390 400 410 420 430 440
150 160 170 180 190 200
pF1KE5 SHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKG
. .. .. .::.:::. . .. :... . : .:. .:. :: :.. .. ..
XP_006 ALFMV---EGTKFRSLLLNMLQKDFTVREELQQQD---VERWLGFITFLCEVFGTM--RS
450 460 470 480 490
210 220 230 240 250 260
pF1KE5 TNGQVTRADILQVG--LRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDME
..:. :. . . :::::.. .. .: ..: :. :: .::. : :
XP_006 STGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM----MT
500 510 520 530 540
270 280 290 300 310 320
pF1KE5 EIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPT
:.. .. .: . : ....::...::....:
XP_006 ELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
550 560 570 580 590 600
330 340 350 360 370 380
pF1KE5 FYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIE
>>NP_001135869 (OMIM: 613178) CBP80/20-dependent transla (600 aa)
initn: 175 init1: 118 opt: 222 Z-score: 242.5 bits: 54.3 E(85289): 9.1e-07
Smith-Waterman score: 263; 21.7% identity (58.2% similar) in 304 aa overlap (7-298:298-580)
10 20 30
pF1KE5 MSDGFDRAPEQTRPL---RAPP--SSQDKIPQQNSE
:.:. :. : :: :. .. . ..
NP_001 HRNAKETMTIENPKLEDTAGDTGHSSLEAPRSPDTLAPVASERLPPQQSGGPEVETKRKD
270 280 290 300 310 320
40 50 60 70 80
pF1KE5 SAMA-----KPQVVVAPVLMSKLSVNAPEFYPSGYSSSYTESYEDGCEDYPTLSEYVQDF
: . .:.... ..: : :. . : .. ... .. .
NP_001 SILPERIGERPKITLLQSSKDRLRRRLKEKVPDEVAVETTTPQQN------KMDKLIE-I
330 340 350 360 370 380
90 100 110 120 130 140
pF1KE5 LNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYL
:: . .. .. .:.. : : .. ..... : :.:. :::.:.: .:.. .:.::. .
NP_001 LNSMRNNSSDVDTKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKM
390 400 410 420 430 440
150 160 170 180 190 200
pF1KE5 SHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKG
. .. .. .::.:::. . .. :... . : .:. .:. :: :.. .. ..
NP_001 ALFMV---EGTKFRSLLLNMLQKDFTVREELQQQD---VERWLGFITFLCEVFGTM--RS
450 460 470 480 490
210 220 230 240 250 260
pF1KE5 TNGQVTRADILQVG--LRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDME
..:. :. . . :::::.. .. .: ..: :. :: .::. : :
NP_001 STGEPFRVLVCPIYTCLRELLQS--QDVKEDAVLCCSMELQSTGRLLEEQLPEM----MT
500 510 520 530 540
270 280 290 300 310 320
pF1KE5 EIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPT
:.. .. .: . : ....::...::....:
NP_001 ELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA
550 560 570 580 590 600
330 340 350 360 370 380
pF1KE5 FYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIE
400 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:43:15 2016 done: Tue Nov 8 01:43:16 2016
Total Scan time: 8.370 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]