FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5548, 400 aa
  1>>>pF1KE5548 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9914+/-0.00041; mu= 18.3661+/- 0.025
 mean_var=56.5724+/-11.440, 0's: 0 Z-trim(111.4): 28  B-trim: 277 in 1/48
 Lambda= 0.170519
 statistics sampled from 19956 (19960) to 19956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.234), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(85289)
NP_004068 (OMIM: 118950) citrate synthase, mitocho ( 466) 2695 671.4 1.3e-192


>>NP_004068 (OMIM: 118950) citrate synthase, mitochondri  (466 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 3579.2  bits: 671.4 E(85289): 1.3e-192
Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:67-466)

                                             10        20        30
pF1KE5                               MMYGGMRGMKGLVYETSVLDPDEGIRFRGF
                                     ::::::::::::::::::::::::::::::
NP_004 LADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGF
         40        50        60        70        80        90      

               40        50        60        70        80        90
pF1KE5 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD
        100       110       120       130       140       150      

              100       110       120       130       140       150
pF1KE5 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI
        160       170       180       190       200       210      

              160       170       180       190       200       210
pF1KE5 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH
        220       230       240       250       260       270      

              220       230       240       250       260       270
pF1KE5 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL
        280       290       300       310       320       330      

              280       290       300       310       320       330
pF1KE5 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN
        340       350       360       370       380       390      

              340       350       360       370       380       390
pF1KE5 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG
        400       410       420       430       440       450      

              400
pF1KE5 LMKFVDSKSG
       ::::::::::
NP_004 LMKFVDSKSG
        460      




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:42:35 2016 done: Tue Nov  8 01:42:36 2016
 Total Scan time:  5.580 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]