FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5547, 399 aa
  1>>>pF1KE5547 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5831+/-0.000972; mu= 15.1519+/- 0.058
 mean_var=64.4830+/-12.614, 0's: 0 Z-trim(103.8): 23  B-trim: 34 in 1/49
 Lambda= 0.159717
 statistics sampled from 7561 (7567) to 7561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.232), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS2305.1 INPP1 gene_id:3628|Hs108|chr2           ( 399) 2625 613.9 8.3e-176


>>CCDS2305.1 INPP1 gene_id:3628|Hs108|chr2                (399 aa)
 initn: 2625 init1: 2625 opt: 2625  Z-score: 3269.8  bits: 613.9 E(32554): 8.3e-176
Smith-Waterman score: 2625; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KE5 MSDILRELLCVSEKAANIARACRQQEALFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MSDILRELLCVSEKAANIARACRQQEALFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IKQNMENKFPGLEKNIFGEESNEFTNDWGEKITLRLCSTEEETAELLSKVLNGNKVASEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 IKQNMENKFPGLEKNIFGEESNEFTNDWGEKITLRLCSTEEETAELLSKVLNGNKVASEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LARVVHQDVAFTDPTLDSTEINVPQDILGIWVDPIDSTYQYIKGSADIKSNQGIFPCGLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LARVVHQDVAFTDPTLDSTEINVPQDILGIWVDPIDSTYQYIKGSADIKSNQGIFPCGLQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CVTILIGVYDIQTGVPLMGVINQPFVSRDPNTLRWKGQCYWGLSYMGTNMHSLQLTISRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 CVTILIGVYDIQTGVPLMGVINQPFVSRDPNTLRWKGQCYWGLSYMGTNMHSLQLTISRR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 NGSETHTGNTGSEAAFSPSFSAVISTSEKETIKAALSRVCGDRIFGAAGAGYKSLCVVQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 NGSETHTGNTGSEAAFSPSFSAVISTSEKETIKAALSRVCGDRIFGAAGAGYKSLCVVQG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LVDIYIFSEDTTFKWDSCAAHAILRAMGGGIVDLKECLERNPETGLDLPQLVYHVENEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LVDIYIFSEDTTFKWDSCAAHAILRAMGGGIVDLKECLERNPETGLDLPQLVYHVENEGA
              310       320       330       340       350       360

              370       380       390         
pF1KE5 AGVDRWANKGGLIAYRSRKRLETFLSLLVQNLAPAETHT
       :::::::::::::::::::::::::::::::::::::::
CCDS23 AGVDRWANKGGLIAYRSRKRLETFLSLLVQNLAPAETHT
              370       380       390         




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:41:53 2016 done: Tue Nov  8 01:41:53 2016
 Total Scan time:  2.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]