FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5533, 467 aa
  1>>>pF1KE5533 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3625+/-0.000729; mu= 17.7508+/- 0.044
 mean_var=68.8637+/-13.711, 0's: 0 Z-trim(109.5): 9  B-trim: 0 in 0/52
 Lambda= 0.154554
 statistics sampled from 10940 (10943) to 10940 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.336), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6           ( 467) 3322 749.6 1.6e-216
CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1            ( 466) 1866 424.9 8.8e-119


>>CCDS5200.1 FUCA2 gene_id:2519|Hs108|chr6                (467 aa)
 initn: 3322 init1: 3322 opt: 3322  Z-score: 4000.6  bits: 749.6 E(32554): 1.6e-216
Smith-Waterman score: 3322; 99.6% identity (100.0% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KE5 MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQVGSWL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS52 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KVNGEAIYETYTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT
              370       380       390       400       410       420

              430       440       450       460       
pF1KE5 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI
              430       440       450       460       

>>CCDS244.2 FUCA1 gene_id:2517|Hs108|chr1                 (466 aa)
 initn: 1076 init1: 931 opt: 1866  Z-score: 2246.0  bits: 424.9 E(32554): 8.8e-119
Smith-Waterman score: 1866; 54.8% identity (76.8% similar) in 469 aa overlap (1-466:1-465)

                10        20          30        40        50       
pF1KE5 MR-PQELPRLAFPLLLLLLLLLPPPPCP--AHSATRFDPTWESLDARQLPAWFDQAKFGI
       :: :    : : : ::::::.:        :.   :. : : :::.: ::::::.::::.
CCDS24 MRAPGMRSRPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGV
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KE5 FIHWGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQW
       ::::::::::..:::::::.:: :  :.: .::.:::::.:.: :::: :::.::. ..:
CCDS24 FIHWGVFSVPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEW
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KE5 ADIFQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRF
       ::.:::.::::.:::.::::::: : :  :::::. : ::.::.: :: .:.:.: ..:.
CCDS24 ADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKR-NIRY
              130       140       150       160       170          

       180       190       200       210       220       230       
pF1KE5 GLYYSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQY
       :::.::.::::::.: :....:. ..:  .::.::::.:::.:.:...::::.   :: :
CCDS24 GLYHSLLEWFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTY
     180       190       200       210       220       230         

       240       250       260       270       280       290       
pF1KE5 WNSTGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTI
       ::::.::.::::.:::.  ::.::::: .  :.:::.:.: :...:  :  :::: : .:
CCDS24 WNSTNFLSWLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSI
     240       250       260       270       280       290         

       300       310       320       330       340       350       
pF1KE5 DKLSWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQVG
       ::.::::::. ..::     :....::.::: ::: :.::::: :: :  .:.:::  ::
CCDS24 DKFSWGYRRDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVG
     300       310       320       330       340       350         

       360       370       380       390       400       410       
pF1KE5 SWLKVNGEAIYETYTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAIL
       .::..:::::: .  :: : .  : .:::::: .   ::::::.:: .: : :  :    
CCDS24 KWLSINGEAIYASKPWRVQWEKNTTSVWYTSKGSA--VYAIFLHWPENGVLNLESP-ITT
     360       370       380       390         400       410       

       420       430       440       450       460       
pF1KE5 GATEVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI
       ..:.. .::    :.: .  ..:... ::::    .: ...:.. ::.: 
CCDS24 STTKITMLGIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGVK
        420       430       440       450       460      




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:33:40 2016 done: Tue Nov  8 01:33:41 2016
 Total Scan time:  2.400 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]