FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5532, 393 aa
  1>>>pF1KE5532 393 - 393 aa - 393 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0405+/-0.000877; mu= 17.9526+/- 0.053
 mean_var=60.4257+/-12.239, 0's: 0 Z-trim(105.2): 19  B-trim: 0 in 0/49
 Lambda= 0.164992
 statistics sampled from 8290 (8302) to 8290 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.255), width:  16
 Scan time:  2.430

The best scores are:                                      opt bits E(32554)
CCDS7722.1 CHID1 gene_id:66005|Hs108|chr11         ( 393) 2645 638.2 3.8e-183
CCDS44511.1 CHID1 gene_id:66005|Hs108|chr11        ( 418) 2425 585.8 2.3e-167
CCDS44510.1 CHID1 gene_id:66005|Hs108|chr11        ( 362) 1368 334.2 1.1e-91


>>CCDS7722.1 CHID1 gene_id:66005|Hs108|chr11              (393 aa)
 initn: 2645 init1: 2645 opt: 2645  Z-score: 3401.5  bits: 638.2 E(32554): 3.8e-183
Smith-Waterman score: 2645; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)

               10        20        30        40        50        60
pF1KE5 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 FYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTL
              310       320       330       340       350       360

              370       380       390   
pF1KE5 KSLQVRLELARELGVGVSIWELGQGLDYFYDLL
       :::::::::::::::::::::::::::::::::
CCDS77 KSLQVRLELARELGVGVSIWELGQGLDYFYDLL
              370       380       390   

>>CCDS44511.1 CHID1 gene_id:66005|Hs108|chr11             (418 aa)
 initn: 2416 init1: 2416 opt: 2425  Z-score: 3118.0  bits: 585.8 E(32554): 2.3e-167
Smith-Waterman score: 2585; 94.0% identity (94.0% similar) in 418 aa overlap (1-393:1-418)

               10        20        30                              
pF1KE5 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEK-----------------------
       :::::::::::::::::::::::::::::::::::::                       
CCDS44 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKVKFCSCCPGWSAMARSWLTATSA
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KE5 --SQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TQSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDV
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KE5 TKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDW
              130       140       150       160       170       180

         160       170       180       190       200       210     
pF1KE5 TYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEA
              190       200       210       220       230       240

         220       230       240       250       260       270     
pF1KE5 LHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPL
              250       260       270       280       290       300

         280       290       300       310       320       330     
pF1KE5 SWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWD
              310       320       330       340       350       360

         340       350       360       370       380       390   
pF1KE5 SQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL
              370       380       390       400       410        

>>CCDS44510.1 CHID1 gene_id:66005|Hs108|chr11             (362 aa)
 initn: 2433 init1: 1360 opt: 1368  Z-score: 1759.2  bits: 334.2 E(32554): 1.1e-91
Smith-Waterman score: 2375; 92.1% identity (92.1% similar) in 393 aa overlap (1-393:1-362)

               10        20        30        40        50        60
pF1KE5 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGM
       :::::::::::::::::::::::                               ::::::
CCDS44 AKNQHFDGFVVEVWNQLLSQKRV-------------------------------TDQLGM
              190       200                                        

              250       260       270       280       290       300
pF1KE5 FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLN
     210       220       230       240       250       260         

              310       320       330       340       350       360
pF1KE5 FYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FYGMDYATSKDAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTL
     270       280       290       300       310       320         

              370       380       390   
pF1KE5 KSLQVRLELARELGVGVSIWELGQGLDYFYDLL
       :::::::::::::::::::::::::::::::::
CCDS44 KSLQVRLELARELGVGVSIWELGQGLDYFYDLL
     330       340       350       360  




393 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:33:04 2016 done: Tue Nov  8 01:33:04 2016
 Total Scan time:  2.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]