FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5512, 360 aa
  1>>>pF1KE5512 360 - 360 aa - 360 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7882+/-0.000785; mu= 14.8060+/- 0.048
 mean_var=81.7823+/-16.606, 0's: 0 Z-trim(109.9): 4  B-trim: 359 in 2/48
 Lambda= 0.141822
 statistics sampled from 11232 (11234) to 11232 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.345), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS10281.1 SNUPN gene_id:10073|Hs108|chr15        ( 360) 2472 515.1 3.6e-146


>>CCDS10281.1 SNUPN gene_id:10073|Hs108|chr15             (360 aa)
 initn: 2472 init1: 2472 opt: 2472  Z-score: 2737.7  bits: 515.1 E(32554): 3.6e-146
Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)

               10        20        30        40        50        60
pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
              310       320       330       340       350       360




360 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:21:57 2016 done: Tue Nov  8 01:21:58 2016
 Total Scan time:  2.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]