Result of FASTA (omim) for
pFN21AE5509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5509, 430 aa
1>>>pF1KE5509 430 - 430 aa - 430 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1034+/-0.000309; mu= 19.6811+/- 0.019
mean_var=74.7186+/-14.648, 0's: 0 Z-trim(117.6): 10 B-trim: 0 in 0/52
Lambda= 0.148375
statistics sampled from 29712 (29720) to 29712 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.348), width: 16
Scan time: 8.260
The best scores are: opt bits E(85289)
NP_114108 (OMIM: 611972) 28S ribosomal protein S5, ( 430) 2911 632.1 8e-181
NP_001308924 (OMIM: 611972) 28S ribosomal protein ( 351) 2378 518.0 1.5e-146
NP_001308925 (OMIM: 611972) 28S ribosomal protein ( 264) 1458 320.9 2.4e-87
NP_001308926 (OMIM: 611972) 28S ribosomal protein ( 264) 1458 320.9 2.4e-87
>>NP_114108 (OMIM: 611972) 28S ribosomal protein S5, mit (430 aa)
initn: 2911 init1: 2911 opt: 2911 Z-score: 3367.3 bits: 632.1 E(85289): 8e-181
Smith-Waterman score: 2911; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)
10 20 30 40 50 60
pF1KE5 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS
370 380 390 400 410 420
430
pF1KE5 VWSNLKRAAT
::::::::::
NP_114 VWSNLKRAAT
430
>>NP_001308924 (OMIM: 611972) 28S ribosomal protein S5, (351 aa)
initn: 2378 init1: 2378 opt: 2378 Z-score: 2751.9 bits: 518.0 E(85289): 1.5e-146
Smith-Waterman score: 2378; 100.0% identity (100.0% similar) in 351 aa overlap (80-430:1-351)
50 60 70 80 90 100
pF1KE5 SSLGTRDTHPYASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAG
::::::::::::::::::::::::::::::
NP_001 MSQQYRPYSFFTKLTADELWKGALAETGAG
10 20 30
110 120 130 140 150 160
pF1KE5 AKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVE
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 ADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVF
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 TMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHT
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 IFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGL
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 FRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWE
280 290 300 310 320 330
410 420 430
pF1KE5 DVKTAQGMKRSVWSNLKRAAT
:::::::::::::::::::::
NP_001 DVKTAQGMKRSVWSNLKRAAT
340 350
>>NP_001308925 (OMIM: 611972) 28S ribosomal protein S5, (264 aa)
initn: 1451 init1: 1451 opt: 1458 Z-score: 1689.3 bits: 320.9 E(85289): 2.4e-87
Smith-Waterman score: 1458; 87.5% identity (91.4% similar) in 257 aa overlap (177-430:10-264)
150 160 170 180 190 200
pF1KE5 PLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGIS---L
:.:. . :. :. :.. . .
NP_001 MARTECPSYEKWSSADHCPKKQGRAGEGGGRHDPAERRV
10 20 30
210 220 230 240 250 260
pF1KE5 GPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD
:: . :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPKEEDE--ETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE5 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE5 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV
160 170 180 190 200 210
390 400 410 420 430
pF1KE5 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT
220 230 240 250 260
>>NP_001308926 (OMIM: 611972) 28S ribosomal protein S5, (264 aa)
initn: 1451 init1: 1451 opt: 1458 Z-score: 1689.3 bits: 320.9 E(85289): 2.4e-87
Smith-Waterman score: 1458; 87.5% identity (91.4% similar) in 257 aa overlap (177-430:10-264)
150 160 170 180 190 200
pF1KE5 PLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGIS---L
:.:. . :. :. :.. . .
NP_001 MARTECPSYEKWSSADHCPKKQGRAGEGGGRHDPAERRV
10 20 30
210 220 230 240 250 260
pF1KE5 GPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD
:: . :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPKEEDE--ETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE5 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE5 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV
160 170 180 190 200 210
390 400 410 420 430
pF1KE5 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT
220 230 240 250 260
430 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:20:45 2016 done: Tue Nov 8 01:20:46 2016
Total Scan time: 8.260 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]