FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5508, 437 aa
  1>>>pF1KE5508 437 - 437 aa - 437 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0132+/-0.0009; mu= 14.3921+/- 0.054
 mean_var=87.8625+/-17.307, 0's: 0 Z-trim(108.3): 40  B-trim: 0 in 0/50
 Lambda= 0.136827
 statistics sampled from 10124 (10152) to 10124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS11244.1 ERAL1 gene_id:26284|Hs108|chr17        ( 437) 2918 586.0 2.4e-167


>>CCDS11244.1 ERAL1 gene_id:26284|Hs108|chr17             (437 aa)
 initn: 2918 init1: 2918 opt: 2918  Z-score: 3117.8  bits: 586.0 E(32554): 2.4e-167
Smith-Waterman score: 2918; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KE5 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
              370       380       390       400       410       420

              430       
pF1KE5 DIFLCDVDIRLSVKLLK
       :::::::::::::::::
CCDS11 DIFLCDVDIRLSVKLLK
              430       




437 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:20:03 2016 done: Tue Nov  8 01:20:04 2016
 Total Scan time:  3.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]