FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5502, 394 aa
  1>>>pF1KE5502 394 - 394 aa - 394 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1331+/-0.000316; mu= 14.6301+/- 0.020
 mean_var=102.1329+/-20.039, 0's: 0 Z-trim(118.2): 12  B-trim: 0 in 0/54
 Lambda= 0.126909
 statistics sampled from 30882 (30890) to 30882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.362), width:  16
 Scan time:  9.190

The best scores are:                                      opt bits E(85289)
NP_115553 (OMIM: 604924) phosphorylated adapter RN ( 394) 2583 483.1  5e-136


>>NP_115553 (OMIM: 604924) phosphorylated adapter RNA ex  (394 aa)
 initn: 2583 init1: 2583 opt: 2583  Z-score: 2563.1  bits: 483.1 E(85289): 5e-136
Smith-Waterman score: 2583; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394)

               10        20        30        40        50        60
pF1KE5 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE
              310       320       330       340       350       360

              370       380       390    
pF1KE5 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF
       ::::::::::::::::::::::::::::::::::
NP_115 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF
              370       380       390    




394 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:17:13 2016 done: Tue Nov  8 01:17:14 2016
 Total Scan time:  9.190 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]