FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5502, 394 aa
  1>>>pF1KE5502 394 - 394 aa - 394 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3203+/-0.000799; mu= 13.4674+/- 0.049
 mean_var=102.6242+/-20.077, 0's: 0 Z-trim(110.4): 16  B-trim: 0 in 0/52
 Lambda= 0.126605
 statistics sampled from 11605 (11607) to 11605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.357), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS4138.1 PHAX gene_id:51808|Hs108|chr5           ( 394) 2583 482.0 4.1e-136


>>CCDS4138.1 PHAX gene_id:51808|Hs108|chr5                (394 aa)
 initn: 2583 init1: 2583 opt: 2583  Z-score: 2557.2  bits: 482.0 E(32554): 4.1e-136
Smith-Waterman score: 2583; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394)

               10        20        30        40        50        60
pF1KE5 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE
              310       320       330       340       350       360

              370       380       390    
pF1KE5 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF
       ::::::::::::::::::::::::::::::::::
CCDS41 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF
              370       380       390    




394 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:17:12 2016 done: Tue Nov  8 01:17:13 2016
 Total Scan time:  3.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]