FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5450, 337 aa
  1>>>pF1KE5450 337 - 337 aa - 337 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0849+/-0.0011; mu= 12.4096+/- 0.066
 mean_var=77.6937+/-15.458, 0's: 0 Z-trim(103.4): 35  B-trim: 0 in 0/49
 Lambda= 0.145506
 statistics sampled from 7381 (7387) to 7381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.227), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13        ( 337) 2145 460.0 1.2e-129
CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2          ( 341) 1737 374.4 7.6e-104


>>CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13             (337 aa)
 initn: 2145 init1: 2145 opt: 2145  Z-score: 2440.8  bits: 460.0 E(32554): 1.2e-129
Smith-Waterman score: 2145; 99.7% identity (99.7% similar) in 337 aa overlap (1-337:1-337)

               10        20        30        40        50        60
pF1KE5 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEEKKDVTQIFNNILRRQIGTRSPTVEYIS
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS94 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 SDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 NFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 NFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPK
              250       260       270       280       290       300

              310       320       330       
pF1KE5 LIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP
       :::::::::::::::::::::::::::::::::::::
CCDS94 LIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP
              310       320       330       

>>CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2               (341 aa)
 initn: 1770 init1: 1631 opt: 1737  Z-score: 1977.9  bits: 374.4 E(32554): 7.6e-104
Smith-Waterman score: 1737; 80.7% identity (93.8% similar) in 337 aa overlap (4-336:1-337)

                10        20        30           40        50      
pF1KE5 MKKMPL-FSKSHKNPAEIVKILKDNLAILEKQD---KKTDKASEEVSKSLQAMKEILCGT
          ::. :.::::.::.::: ::...:.:::::   ::..::.:::::.: :::::: ::
CCDS24    MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGT
                  10        20        30        40        50       

         60        70        80        90       100       110      
pF1KE5 NEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEEKKDVTQIFNNILRRQIGTRSPTV
       ::::: ::::::::::::.:::: ::.::::::::: ::::.::::::::::::::.:::
CCDS24 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV
        60        70        80        90       100       110       

        120       130       140       150       160       170      
pF1KE5 EYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELST
       ::: .. .::::::::::.:.::: :::::::::::::::::::.:.:: :::.:::.::
CCDS24 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST
       120       130       140       150       160       170       

        180       190       200       210       220       230      
pF1KE5 FDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELI
       :::::::::::::::::::.: :.::::.:: .: .:::::.:::::::::::::::::.
CCDS24 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL
       180       190       200       210       220       230       

        240       250       260       270       280       290      
pF1KE5 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK
       ::::::.::::::::::::::::::::::: :::::::::::::::.:.:::::..::::
CCDS24 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK
       240       250       260       270       280       290       

        300       310       320       330          
pF1KE5 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP   
       :: :::::::.::..::.:::: :::.::.:::::::. :    
CCDS24 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA
       300       310       320       330       340 




337 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:53:16 2016 done: Tue Nov  8 00:53:17 2016
 Total Scan time:  2.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]