FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5450, 337 aa 1>>>pF1KE5450 337 - 337 aa - 337 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0849+/-0.0011; mu= 12.4096+/- 0.066 mean_var=77.6937+/-15.458, 0's: 0 Z-trim(103.4): 35 B-trim: 0 in 0/49 Lambda= 0.145506 statistics sampled from 7381 (7387) to 7381 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.227), width: 16 Scan time: 2.340 The best scores are: opt bits E(32554) CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13 ( 337) 2145 460.0 1.2e-129 CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2 ( 341) 1737 374.4 7.6e-104 >>CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13 (337 aa) initn: 2145 init1: 2145 opt: 2145 Z-score: 2440.8 bits: 460.0 E(32554): 1.2e-129 Smith-Waterman score: 2145; 99.7% identity (99.7% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE5 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQDKKTDKASEEVSKSLQAMKEILCGTNEKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEEKKDVTQIFNNILRRQIGTRSPTVEYIS :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: CCDS94 PPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYIS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 AHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 SDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 NFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 NFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPK 250 260 270 280 290 300 310 320 330 pF1KE5 LIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP ::::::::::::::::::::::::::::::::::::: CCDS94 LIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP 310 320 330 >>CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2 (341 aa) initn: 1770 init1: 1631 opt: 1737 Z-score: 1977.9 bits: 374.4 E(32554): 7.6e-104 Smith-Waterman score: 1737; 80.7% identity (93.8% similar) in 337 aa overlap (4-336:1-337) 10 20 30 40 50 pF1KE5 MKKMPL-FSKSHKNPAEIVKILKDNLAILEKQD---KKTDKASEEVSKSLQAMKEILCGT ::. :.::::.::.::: ::...:.::::: ::..::.:::::.: :::::: :: CCDS24 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGT 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 NEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEEKKDVTQIFNNILRRQIGTRSPTV ::::: ::::::::::::.:::: ::.::::::::: ::::.::::::::::::::.::: CCDS24 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELST ::: .. .::::::::::.:.::: :::::::::::::::::::.:.:: :::.:::.:: CCDS24 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 FDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELI :::::::::::::::::::.: :.::::.:: .: .:::::.:::::::::::::::::. CCDS24 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK ::::::.::::::::::::::::::::::: :::::::::::::::.:.:::::..:::: CCDS24 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 240 250 260 270 280 290 300 310 320 330 pF1KE5 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP :: :::::::.::..::.:::: :::.::.:::::::. : CCDS24 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA 300 310 320 330 340 337 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:53:16 2016 done: Tue Nov 8 00:53:17 2016 Total Scan time: 2.340 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]