FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5440, 329 aa
  1>>>pF1KE5440 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7080+/-0.000822; mu= 14.0503+/- 0.049
 mean_var=73.0138+/-14.497, 0's: 0 Z-trim(107.2): 32  B-trim: 3 in 1/48
 Lambda= 0.150097
 statistics sampled from 9386 (9410) to 9386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS2875.1 ACTR8 gene_id:93973|Hs108|chr3          ( 624) 1826 404.7  1e-112


>>CCDS2875.1 ACTR8 gene_id:93973|Hs108|chr3               (624 aa)
 initn: 2173 init1: 1820 opt: 1826  Z-score: 2137.2  bits: 404.7 E(32554): 1e-112
Smith-Waterman score: 2017; 86.7% identity (87.3% similar) in 361 aa overlap (14-329:264-624)

                                10        20        30        40   
pF1KE5                  MILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCC
                                     ::::::::::::::::::::::::::::::
CCDS28 LLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCC
           240       250       260       270       280       290   

            50                                                     
pF1KE5 VEDGVSHRNTRI------------FSW---------------------------------
       :::::::::::.            : :                                 
CCDS28 VEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL
           300       310       320       330       340       350   

       60        70        80        90       100       110        
pF1KE5 NQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQ
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 DQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQ
           360       370       380       390       400       410   

      120       130       140       150       160       170        
pF1KE5 GDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDL
           420       430       440       450       460       470   

      180       190       200       210       220       230        
pF1KE5 GSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 GSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYS
           480       490       500       510       520       530   

      240       250       260       270       280       290        
pF1KE5 SILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 SILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLA
           540       550       560       570       580       590   

      300       310       320         
pF1KE5 CLDTTQELWIYQREWQRFGVRMLRERAAFVW
       :::::::::::::::::::::::::::::::
CCDS28 CLDTTQELWIYQREWQRFGVRMLRERAAFVW
           600       610       620    




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:47:06 2016 done: Tue Nov  8 00:47:06 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]