FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5437, 351 aa
  1>>>pF1KE5437 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0483+/-0.000831; mu= 14.1648+/- 0.051
 mean_var=96.4711+/-18.891, 0's: 0 Z-trim(109.8): 10  B-trim: 0 in 0/51
 Lambda= 0.130580
 statistics sampled from 11170 (11174) to 11170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.343), width:  16
 Scan time:  2.630

The best scores are:                                      opt bits E(32554)
CCDS7317.1 MCU gene_id:90550|Hs108|chr10           ( 351) 2329 448.7 3.4e-126
CCDS59219.1 MCU gene_id:90550|Hs108|chr10          ( 302) 1983 383.5 1.3e-106
CCDS59218.1 MCU gene_id:90550|Hs108|chr10          ( 330) 1107 218.5 6.5e-57
CCDS3683.2 MCUB gene_id:55013|Hs108|chr4           ( 336)  995 197.4 1.5e-50


>>CCDS7317.1 MCU gene_id:90550|Hs108|chr10                (351 aa)
 initn: 2329 init1: 2329 opt: 2329  Z-score: 2379.0  bits: 448.7 E(32554): 3.4e-126
Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KE5 MAAAAGRSLLLLLSSRGGGGGGAGGCGALTAGCFPGLGVSRHRQQQHHRTVHQRIASWQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAAAGRSLLLLLSSRGGGGGGAGGCGALTAGCFPGLGVSRHRQQQHHRTVHQRIASWQN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 AYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYL
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KE5 LFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
              310       320       330       340       350 

>>CCDS59219.1 MCU gene_id:90550|Hs108|chr10               (302 aa)
 initn: 1983 init1: 1983 opt: 1983  Z-score: 2027.7  bits: 383.5 E(32554): 1.3e-106
Smith-Waterman score: 1983; 100.0% identity (100.0% similar) in 301 aa overlap (51-351:2-302)

               30        40        50        60        70        80
pF1KE5 GGAGGCGALTAGCFPGLGVSRHRQQQHHRTVHQRIASWQNLGAVYCSTVVPSDDVTVVYQ
                                     ::::::::::::::::::::::::::::::
CCDS59                              MVHQRIASWQNLGAVYCSTVVPSDDVTVVYQ
                                            10        20        30 

               90       100       110       120       130       140
pF1KE5 NGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTG
              40        50        60        70        80        90 

              150       160       170       180       190       200
pF1KE5 IDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKE
             100       110       120       130       140       150 

              210       220       230       240       250       260
pF1KE5 RELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSW
             160       170       180       190       200       210 

              270       280       290       300       310       320
pF1KE5 DIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQL
             220       230       240       250       260       270 

              330       340       350 
pF1KE5 KDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
       :::::::::::::::::::::::::::::::
CCDS59 KDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
             280       290       300  

>>CCDS59218.1 MCU gene_id:90550|Hs108|chr10               (330 aa)
 initn: 1978 init1: 1107 opt: 1107  Z-score: 1135.3  bits: 218.5 E(32554): 6.5e-57
Smith-Waterman score: 1933; 86.0% identity (88.9% similar) in 351 aa overlap (1-351:1-330)

               10        20        30        40        50        60
pF1KE5 MAAAAGRSLLLLLSSRGGGGGGAGGCGALTAGCFPGLGVSRHRQQQHHRTVHQRIASWQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAAAGRSLLLLLSSRGGGGGGAGGCGALTAGCFPGLGVSRHRQQQHHRTVHQRIASWQN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRDLLSHENAATLNDVK
       :::::::::::::::::::::::::::::::::::::::::::::  ..  ...  :  .
CCDS59 GIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDLTYHVRPPKRVEMGFCHVGQ-NGFE
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KE5 TLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAPLEKVRIEISRKAEKRTTLVLWGGL
        :...                     :     : : .  :::::::::::::::::::::
CCDS59 LLTSSY--------------------LPASASQSAEIIAVRIEISRKAEKRTTLVLWGGL
     180                           190       200       210         

              250       260       270       280       290       300
pF1KE5 AYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAMAMYAYFVMTRQEYVYPEARDRQYL
     220       230       240       250       260       270         

              310       320       330       340       350 
pF1KE5 LFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRDPLQVHLPLRQIGEKD
     280       290       300       310       320       330

>>CCDS3683.2 MCUB gene_id:55013|Hs108|chr4                (336 aa)
 initn: 1016 init1: 995 opt: 995  Z-score: 1021.1  bits: 197.4 E(32554): 1.5e-50
Smith-Waterman score: 995; 48.8% identity (83.9% similar) in 285 aa overlap (67-351:52-336)

         40        50        60        70        80        90      
pF1KE5 LGVSRHRQQQHHRTVHQRIASWQNLGAVYCSTVVPSDDVTVVYQNGLPVISVRLPSRRER
                                     ::::: :..::.:..:::.... ::::.::
CCDS36 PARPWPLPPPPQVLRVKLCGNVKYYQSHHYSTVVPPDEITVIYRHGLPLVTLTLPSRKER
              30        40        50        60        70        80 

        100       110       120       130       140       150      
pF1KE5 CQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGIDLLLLDDFKLVINDL
       :::..::. ..:: ::..::.::.::  .::.. ::  ..::: .:.::..::::::: .
CCDS36 CQFVVKPMLSTVGSFLQDLQNEDKGIKTAAIFTADGNMISASTLMDILLMNDFKLVINKI
              90       100       110       120       130       140 

        160       170       180       190       200       210      
pF1KE5 TYHVRPPKRDLLSHENAATLNDVKTLVQQLYTTLCIEQHQLNKERELIERLEDLKEQLAP
       .: :. :::.  :.:..: .. .:.::..:.: : .:. : ..:..:.:... ::::: :
CCDS36 AYDVQCPKREKPSNEHTAEMEHMKSLVHRLFTILHLEESQKKREHHLLEKIDHLKEQLQP
             150       160       170       180       190       200 

        220       230       240       250       260       270      
pF1KE5 LEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAM
       ::.:.  :  ..: .:. .::.::: .. : : :: :::: ::::::::::::::....:
CCDS36 LEQVKAGIEAHSEAKTSGLLWAGLALLSIQGGALAWLTWWVYSWDIMEPVTYFITFANSM
             210       220       230       240       250       260 

        280       290       300       310       320       330      
pF1KE5 AMYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKSRFDLEKYNQLKDAIAQAEMDLKRLRD
       ...:::..:::.:.:  ...::.: :::: .:...::...::.::. .:.:. .::. : 
CCDS36 VFFAYFIVTRQDYTYSAVKSRQFLQFFHKKSKQQHFDVQQYNKLKEDLAKAKESLKQARH
             270       280       290       300       310       320 

        340       350 
pF1KE5 PLQVHLPLRQIGEKD
        : ... .....::.
CCDS36 SLCLQMQVEELNEKN
             330      




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:45:14 2016 done: Tue Nov  8 00:45:14 2016
 Total Scan time:  2.630 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]