FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5423, 348 aa
  1>>>pF1KE5423 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4061+/-0.000316; mu= 15.7620+/- 0.020
 mean_var=76.0191+/-15.175, 0's: 0 Z-trim(116.9): 7  B-trim: 368 in 1/57
 Lambda= 0.147100
 statistics sampled from 28470 (28474) to 28470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.334), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
NP_009139 (OMIM: 607118,614582) 39S ribosomal prot ( 348) 2438 526.6  3e-149


>>NP_009139 (OMIM: 607118,614582) 39S ribosomal protein   (348 aa)
 initn: 2438 init1: 2438 opt: 2438  Z-score: 2800.4  bits: 526.6 E(85289): 3e-149
Smith-Waterman score: 2438; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)

               10        20        30        40        50        60
pF1KE5 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK
              250       260       270       280       290       300

              310       320       330       340        
pF1KE5 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA
              310       320       330       340        




348 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:36:59 2016 done: Tue Nov  8 00:37:00 2016
 Total Scan time:  7.050 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]