FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5417, 329 aa
  1>>>pF1KE5417 329 - 329 aa - 329 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2674+/-0.000311; mu= 17.8850+/- 0.020
 mean_var=87.4334+/-17.386, 0's: 0 Z-trim(117.7): 7  B-trim: 244 in 1/50
 Lambda= 0.137163
 statistics sampled from 29855 (29862) to 29855 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.35), width:  16
 Scan time:  7.420

The best scores are:                                      opt bits E(85289)
NP_443183 (OMIM: 611388) deoxynucleotidyltransfera ( 329) 2236 452.0 8.2e-127


>>NP_443183 (OMIM: 611388) deoxynucleotidyltransferase t  (329 aa)
 initn: 2236 init1: 2236 opt: 2236  Z-score: 2397.7  bits: 452.0 E(85289): 8.2e-127
Smith-Waterman score: 2236; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE5 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 TDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 CLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 AAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 KYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLP
              250       260       270       280       290       300

              310       320         
pF1KE5 SWMVEKMRKYMETLRTENEHRAVEAPPQT
       :::::::::::::::::::::::::::::
NP_443 SWMVEKMRKYMETLRTENEHRAVEAPPQT
              310       320         




329 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:33:07 2016 done: Tue Nov  8 00:33:09 2016
 Total Scan time:  7.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]