FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5414, 349 aa
  1>>>pF1KE5414 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6998+/-0.000755; mu= 16.2396+/- 0.046
 mean_var=97.4329+/-19.048, 0's: 0 Z-trim(110.8): 9  B-trim: 9 in 1/53
 Lambda= 0.129934
 statistics sampled from 11885 (11887) to 11885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS695.1 RPF1 gene_id:80135|Hs108|chr1            ( 349) 2326 445.9 2.3e-125
CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2           ( 291)  467 97.4 1.6e-20


>>CCDS695.1 RPF1 gene_id:80135|Hs108|chr1                 (349 aa)
 initn: 2326 init1: 2326 opt: 2326  Z-score: 2364.0  bits: 445.9 E(32554): 2.3e-125
Smith-Waterman score: 2326; 99.7% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KE5 MAKAGDKSGSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE
              250       260       270       280       290       300

              310       320       330       340         
pF1KE5 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL
              310       320       330       340         

>>CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2                (291 aa)
 initn: 440 init1: 233 opt: 467  Z-score: 481.8  bits: 97.4 E(32554): 1.6e-20
Smith-Waterman score: 467; 30.4% identity (63.1% similar) in 293 aa overlap (60-349:7-288)

      30        40        50        60        70        80         
pF1KE5 GAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKER
                                     . ::. .. . ... ..   .:... .. :
CCDS21                         MLRREARLRREYLYRKAREEAQR---SAQERKERLR
                                       10        20           30   

      90       100       110       120         130       140       
pF1KE5 EALGDKAPPKPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQTSPKILIT
       .:: ..   . .:  .  . .  . ... .:   : . ... ::.   .    .::..::
CCDS21 RALEEN---RLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEY--RWAGVEDPKVMIT
               40        50        60        70          80        

       150       160       170       180       190       200       
pF1KE5 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG
       ::  : .:   . ..:. :.:... . :    .  ..  : :   :::.:..: : :: :
CCDS21 TSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVG
       90       100       110       120       130       140        

       210       220       230       240       250       260       
pF1KE5 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF
       ::.:::: ::::.: . .: .:..:   :   .:  :..: ..:..:::. .. ..  ::
CCDS21 LIVSHLPFGPTAYFTLCNVVMRHDIPDLGT-MSEAKPHLITHGFSSRLGKRVSDILRYLF
      150       160       170        180       190       200       

       270       280       290       300       310       320       
pF1KE5 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSK
       :  :.  ...: :: :: ::: :: : :   ....: . :.:::: :::  .. ::....
CCDS21 P-VPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQE
        210       220       230       240       250       260      

        330       340            
pF1KE5 Y-GEYEWVHKPREMDTSRRKFHL   
         .. ::  .:   .:.:..  :   
CCDS21 ATADVEWRWHPYT-NTARKRVFLSTE
        270        280       290 




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:30:59 2016 done: Tue Nov  8 00:30:59 2016
 Total Scan time:  2.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]