FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5413, 310 aa
  1>>>pF1KE5413 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3636+/-0.000337; mu= 15.2190+/- 0.021
 mean_var=68.0103+/-13.962, 0's: 0 Z-trim(115.2): 15  B-trim: 1221 in 1/54
 Lambda= 0.155520
 statistics sampled from 25539 (25553) to 25539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.3), width:  16
 Scan time:  7.110

The best scores are:                                      opt bits E(85289)
NP_775745 (OMIM: 615367) protein N-terminal aspara ( 310) 2090 477.7 1.3e-134
NP_001257696 (OMIM: 615367) protein N-terminal asp ( 205) 1392 321.0 1.2e-87
NP_001257695 (OMIM: 615367) protein N-terminal asp ( 205) 1392 321.0 1.2e-87
XP_011520657 (OMIM: 615367) PREDICTED: protein N-t ( 227) 1301 300.6 1.9e-81


>>NP_775745 (OMIM: 615367) protein N-terminal asparagine  (310 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2537.9  bits: 477.7 E(85289): 1.3e-134
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE5 MPLLVEGRRVRLPQSAGDLVRAHPPLEERARLLRGQSVQQVGPQGLLYVQQRELAVTSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MPLLVEGRRVRLPQSAGDLVRAHPPLEERARLLRGQSVQQVGPQGLLYVQQRELAVTSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 LEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AVNIKTAEIYRASFQDRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 AVNIKTAEIYRASFQDRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 WLHQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 WLHQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDG
              250       260       270       280       290       300

              310
pF1KE5 LWEKISSPGS
       ::::::::::
NP_775 LWEKISSPGS
              310

>>NP_001257696 (OMIM: 615367) protein N-terminal asparag  (205 aa)
 initn: 1392 init1: 1392 opt: 1392  Z-score: 1694.2  bits: 321.0 E(85289): 1.2e-87
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 205 aa overlap (106-310:1-205)

          80        90       100       110       120       130     
pF1KE5 HIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                     ::::::::::::::::::::::::::::::
NP_001                               MNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                             10        20        30

         140       150       160       170       180       190     
pF1KE5 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
               40        50        60        70        80        90

         200       210       220       230       240       250     
pF1KE5 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
              100       110       120       130       140       150

         260       270       280       290       300       310
pF1KE5 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
              160       170       180       190       200     

>>NP_001257695 (OMIM: 615367) protein N-terminal asparag  (205 aa)
 initn: 1392 init1: 1392 opt: 1392  Z-score: 1694.2  bits: 321.0 E(85289): 1.2e-87
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 205 aa overlap (106-310:1-205)

          80        90       100       110       120       130     
pF1KE5 HIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                     ::::::::::::::::::::::::::::::
NP_001                               MNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                             10        20        30

         140       150       160       170       180       190     
pF1KE5 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
               40        50        60        70        80        90

         200       210       220       230       240       250     
pF1KE5 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
              100       110       120       130       140       150

         260       270       280       290       300       310
pF1KE5 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
              160       170       180       190       200     

>>XP_011520657 (OMIM: 615367) PREDICTED: protein N-termi  (227 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1583.2  bits: 300.6 E(85289): 1.9e-81
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (119-310:36-227)

       90       100       110       120       130       140        
pF1KE5 CLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQLSQKLTHQLLSEFD
                                     ::::::::::::::::::::::::::::::
XP_011 QELGGGRRHRPAVKTTVHTPVPSPCSLWRPGRLEVHLVGGFSDDRQLSQKLTHQLLSEFD
          10        20        30        40        50        60     

      150       160       170       180       190       200        
pF1KE5 RQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQDRGPEEQLRAART
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQDRGPEEQLRAART
          70        80        90       100       110       120     

      210       220       230       240       250       260        
pF1KE5 LAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLSTSPLAEPPHFVEHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLSTSPLAEPPHFVEHI
         130       140       150       160       170       180     

      270       280       290       300       310
pF1KE5 RSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
       ::::::::::::::::::::::::::::::::::::::::::
XP_011 RSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
         190       200       210       220       




310 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:30:22 2016 done: Tue Nov  8 00:30:23 2016
 Total Scan time:  7.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]