FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5413, 310 aa
  1>>>pF1KE5413 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8674+/-0.000736; mu= 12.1929+/- 0.044
 mean_var=63.1348+/-12.719, 0's: 0 Z-trim(108.2): 14  B-trim: 0 in 0/51
 Lambda= 0.161413
 statistics sampled from 10084 (10090) to 10084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.31), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS10558.1 NTAN1 gene_id:123803|Hs108|chr16       ( 310) 2090 495.1 2.9e-140
CCDS73832.1 NTAN1 gene_id:123803|Hs108|chr16       ( 205) 1392 332.5 1.6e-91


>>CCDS10558.1 NTAN1 gene_id:123803|Hs108|chr16            (310 aa)
 initn: 2090 init1: 2090 opt: 2090  Z-score: 2631.8  bits: 495.1 E(32554): 2.9e-140
Smith-Waterman score: 2090; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE5 MPLLVEGRRVRLPQSAGDLVRAHPPLEERARLLRGQSVQQVGPQGLLYVQQRELAVTSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPLLVEGRRVRLPQSAGDLVRAHPPLEERARLLRGQSVQQVGPQGLLYVQQRELAVTSPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEVHLVGGFSDDRQLSQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 AVNIKTAEIYRASFQDRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AVNIKTAEIYRASFQDRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 WLHQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WLHQDDKQILENLSTSPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDG
              250       260       270       280       290       300

              310
pF1KE5 LWEKISSPGS
       ::::::::::
CCDS10 LWEKISSPGS
              310

>>CCDS73832.1 NTAN1 gene_id:123803|Hs108|chr16            (205 aa)
 initn: 1392 init1: 1392 opt: 1392  Z-score: 1756.4  bits: 332.5 E(32554): 1.6e-91
Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 205 aa overlap (106-310:1-205)

          80        90       100       110       120       130     
pF1KE5 HIVVLRHTGNGATCLTHCDGTDTKAEVPLIMNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                     ::::::::::::::::::::::::::::::
CCDS73                               MNSIKSFSDHAQCGRLEVHLVGGFSDDRQL
                                             10        20        30

         140       150       160       170       180       190     
pF1KE5 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SQKLTHQLLSEFDRQEDDIHLVTLCVTELNDREENENHFPVIYGIAVNIKTAEIYRASFQ
               40        50        60        70        80        90

         200       210       220       230       240       250     
pF1KE5 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DRGPEEQLRAARTLAGGPMISIYDAETEQLRIGPYSWTPFPHVDFWLHQDDKQILENLST
              100       110       120       130       140       150

         260       270       280       290       300       310
pF1KE5 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SPLAEPPHFVEHIRSTLMFLKKHPSPAHTLFSGNKALLYKKNEDGLWEKISSPGS
              160       170       180       190       200     




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:30:22 2016 done: Tue Nov  8 00:30:22 2016
 Total Scan time:  1.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]