Result of FASTA (omim) for
pFN21AE5407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5407, 331 aa
1>>>pF1KE5407 331 - 331 aa - 331 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3109+/-0.00032; mu= 16.2331+/- 0.020
mean_var=68.5819+/-13.495, 0's: 0 Z-trim(116.0): 7 B-trim: 32 in 1/58
Lambda= 0.154871
statistics sampled from 26909 (26916) to 26909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.316), width: 16
Scan time: 7.000
The best scores are: opt bits E(85289)
NP_056494 (OMIM: 610727) probable tRNA pseudouridi ( 331) 2201 500.5 2e-141
NP_001316791 (OMIM: 610727) probable tRNA pseudour ( 275) 1816 414.4 1.4e-115
NP_001316790 (OMIM: 610727) probable tRNA pseudour ( 287) 1666 380.9 1.7e-105
NP_001316792 (OMIM: 610727) probable tRNA pseudour ( 227) 1498 343.3 2.8e-94
NP_631908 (OMIM: 610726) probable tRNA pseudouridi ( 349) 382 94.1 4.7e-19
>>NP_056494 (OMIM: 610727) probable tRNA pseudouridine s (331 aa)
initn: 2201 init1: 2201 opt: 2201 Z-score: 2659.9 bits: 500.5 E(85289): 2e-141
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
250 260 270 280 290 300
310 320 330
pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
:::::::::::::::::::::::::::::::
NP_056 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
310 320 330
>>NP_001316791 (OMIM: 610727) probable tRNA pseudouridin (275 aa)
initn: 1816 init1: 1816 opt: 1816 Z-score: 2196.2 bits: 414.4 E(85289): 1.4e-115
Smith-Waterman score: 1816; 100.0% identity (100.0% similar) in 275 aa overlap (57-331:1-275)
30 40 50 60 70 80
pF1KE5 RDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGSEEKELTLTATSVPSFINHPLVCGPAF
::::::::::::::::::::::::::::::
NP_001 MEGSEEKELTLTATSVPSFINHPLVCGPAF
10 20 30
90 100 110 120 130 140
pF1KE5 AHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE5 LVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPM
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE5 LITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLD
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE5 SALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSWDSQGPSSTLGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSWDSQGPSSTLGLE
220 230 240 250 260 270
330
pF1KE5 RGAGQ
:::::
NP_001 RGAGQ
>>NP_001316790 (OMIM: 610727) probable tRNA pseudouridin (287 aa)
initn: 1896 init1: 1666 opt: 1666 Z-score: 2014.8 bits: 380.9 E(85289): 1.7e-105
Smith-Waterman score: 1812; 86.7% identity (86.7% similar) in 331 aa overlap (1-331:1-287)
10 20 30 40 50 60
pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS
::::::::::::::::::::::::::::::::::::
NP_001 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLK------------------------
10 20 30
70 80 90 100 110 120
pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
::::::::::::::::::::::::::::::::::::::::
NP_001 --------------------VCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
40 50 60 70
130 140 150 160 170 180
pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
80 90 100 110 120 130
190 200 210 220 230 240
pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
200 210 220 230 240 250
310 320 330
pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
:::::::::::::::::::::::::::::::
NP_001 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
260 270 280
>>NP_001316792 (OMIM: 610727) probable tRNA pseudouridin (227 aa)
initn: 1498 init1: 1498 opt: 1498 Z-score: 1813.5 bits: 343.3 E(85289): 2.8e-94
Smith-Waterman score: 1498; 99.6% identity (100.0% similar) in 227 aa overlap (105-331:1-227)
80 90 100 110 120 130
pF1KE5 FINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLL
.:::::::::::::::::::::::::::::
NP_001 MVLGVGHGCRLLTDMYNAHLTKDYTVRGLL
10 20 30
140 150 160 170 180 190
pF1KE5 GKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAV
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 RGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQ
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 VRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSW
160 170 180 190 200 210
320 330
pF1KE5 DSQGPSSTLGLERGAGQ
:::::::::::::::::
NP_001 DSQGPSSTLGLERGAGQ
220
>>NP_631908 (OMIM: 610726) probable tRNA pseudouridine s (349 aa)
initn: 253 init1: 146 opt: 382 Z-score: 463.1 bits: 94.1 E(85289): 4.7e-19
Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (89-309:112-330)
60 70 80 90 100 110
pF1KE5 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD
::.: : ::. : ::::.:.: : ..::.
NP_631 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS
90 100 110 120 130 140
120 130 140 150 160 170
pF1KE5 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM
: .. .: ::. : :::::: . ::..:. ::..:.: .. :: . :. ... .
NP_631 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL
150 160 170 180 190
180 190 200 210 220 230
pF1KE5 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK
:: : :. . :: ... :. . .: : :: : :.:.: .:.
NP_631 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS
200 210 220 230 240 250
240 250 260 270 280 290
pF1KE5 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK
:: .:: ::.. : .. ::..: :::. :: . .: . .: .... . :::
NP_631 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL
260 270 280 290 300 310
300 310 320 330
pF1KE5 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
. : ...:. :
NP_631 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC
320 330 340
331 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:26:19 2016 done: Tue Nov 8 00:26:20 2016
Total Scan time: 7.000 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]