FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5407, 331 aa
  1>>>pF1KE5407 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3598+/-0.000743; mu= 16.1009+/- 0.045
 mean_var=69.0419+/-13.989, 0's: 0 Z-trim(109.2): 7  B-trim: 0 in 0/52
 Lambda= 0.154354
 statistics sampled from 10699 (10701) to 10699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.329), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9          ( 331) 2201 498.8 2.5e-141
CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10        ( 349)  382 93.7 2.3e-19


>>CCDS6897.1 TRUB2 gene_id:26995|Hs108|chr9               (331 aa)
 initn: 2201 init1: 2201 opt: 2201  Z-score: 2650.8  bits: 498.8 E(32554): 2.5e-141
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KE5 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MGSAGLSRLHGLFAVYKPPGLKWKHLRDTVELQLLKGLNARKPPAPKQRVRFLLGPMEGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTDMY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSP
              250       260       270       280       290       300

              310       320       330 
pF1KE5 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
       :::::::::::::::::::::::::::::::
CCDS68 GLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
              310       320       330 

>>CCDS7591.1 TRUB1 gene_id:142940|Hs108|chr10             (349 aa)
 initn: 253 init1: 146 opt: 382  Z-score: 461.3  bits: 93.7 E(32554): 2.3e-19
Smith-Waterman score: 382; 34.1% identity (61.0% similar) in 223 aa overlap (89-309:112-330)

       60        70        80        90       100       110        
pF1KE5 GSEEKELTLTATSVPSFINHPLVCGPAFAHLKVGVGHRLDAQASGVLVLGVGHGCRLLTD
                                     ::.: :  ::. : ::::.:.: : ..::.
CCDS75 SAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTS
              90       100       110       120       130       140 

      120       130       140       150       160       170        
pF1KE5 MYNAHLTKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVM
       : ..  .: ::. : :::::: .   ::..:.  ::..:.: .. ::  . :. ...  .
CCDS75 MLSG--SKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPL
               150       160       170       180       190         

      180       190        200       210       220       230       
pF1KE5 YSNLDLKTQEAYEMAVRG-LIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRK
       :: :    :.   .  :: ...     :. . .:    : :: : :.:.:       .:.
CCDS75 YSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFY--IRS
     200       210       220       230       240       250         

       240       250       260        270       280       290      
pF1KE5 LVHEIGLELKTTAVCTQVRRTRDGFFTLDS-ALLRTQWDLTNIQDAIRAATPQVAAELEK
       :: .:: ::.. :   .. ::..: :::.  :: . .: . .: ....  .    :::  
CCDS75 LVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELAL
       260       270       280       290       300       310       

        300       310       320       330 
pF1KE5 SLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ
       . :   ...:. :                      
CCDS75 KKSKPESNEQVLSCEYITLNEPKREDDVIKTC   
       320       330       340            




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:26:18 2016 done: Tue Nov  8 00:26:18 2016
 Total Scan time:  2.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]