FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5403, 340 aa
  1>>>pF1KE5403 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0365+/-0.000892; mu= 7.7524+/- 0.053
 mean_var=102.4653+/-21.922, 0's: 0 Z-trim(108.7): 45  B-trim: 0 in 0/51
 Lambda= 0.126703
 statistics sampled from 10314 (10358) to 10314 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS1234.1 DUSP12 gene_id:11266|Hs108|chr1         ( 340) 2306 431.9 3.6e-121
CCDS33418.1 DUSP28 gene_id:285193|Hs108|chr2       ( 176)  306 66.2 2.3e-11


>>CCDS1234.1 DUSP12 gene_id:11266|Hs108|chr1              (340 aa)
 initn: 2306 init1: 2306 opt: 2306  Z-score: 2288.8  bits: 431.9 E(32554): 3.6e-121
Smith-Waterman score: 2306; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KE5 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHREG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQWMESALLGVMDGQLLCPKCSAKLGSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQWMESALLGVMDGQLLCPKCSAKLGSF
              250       260       270       280       290       300

              310       320       330       340
pF1KE5 NWYGEQCSCGRWITPAFQIHKNRVDEMKILPVLGSQTGKI
       ::::::::::::::::::::::::::::::::::::::::
CCDS12 NWYGEQCSCGRWITPAFQIHKNRVDEMKILPVLGSQTGKI
              310       320       330       340

>>CCDS33418.1 DUSP28 gene_id:285193|Hs108|chr2            (176 aa)
 initn: 225 init1: 225 opt: 306  Z-score: 317.6  bits: 66.2 E(32554): 2.3e-11
Smith-Waterman score: 306; 39.0% identity (70.2% similar) in 141 aa overlap (27-166:19-154)

               10        20        30        40        50        60
pF1KE5 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD
                                 ...: :.:..:.: :..  ..: .::.:  ..:.
CCDS33         MGPAEAGRRGAASPVPPPLVRVAPSLFLGSARAAGAEEQLARAGVTLCVNVS
                       10        20        30        40        50  

               70        80        90        100       110         
pF1KE5 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLD-RCVAFIGQARAEGRAVLVHCHAGV
        ..:. .: ::: .:    ::..: :  :::.::.  :.:. . .:: : : ::.:. : 
CCDS33 RQQPGPRA-PGVAEL---RVPVFDDPAEDLLAHLEPTCAAMEAAVRAGG-ACLVYCKNGR
             60            70        80        90        100       

     120       130       140       150       160       170         
pF1KE5 SRSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIY
       :::.:. ::.::.   : . ::.. ..  .: :. : ::  ::. :.             
CCDS33 SRSAAVCTAYLMRHRGLSLAKAFQMVKSARPVAEPNPGFWSQLQKYEEALQAQSCLQGEP
       110       120       130       140       150       160       

     180       190       200       210       220       230         
pF1KE5 KQYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHRE
                                                                   
CCDS33 PALGLGPEA                                                   
       170                                                         




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:23:42 2016 done: Tue Nov  8 00:23:42 2016
 Total Scan time:  1.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]