FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5402, 313 aa
  1>>>pF1KE5402 313 - 313 aa - 313 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6252+/-0.000893; mu= 14.1505+/- 0.054
 mean_var=67.9588+/-13.385, 0's: 0 Z-trim(105.1): 41  B-trim: 0 in 0/51
 Lambda= 0.155579
 statistics sampled from 8209 (8250) to 8209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS5580.1 STYXL1 gene_id:51657|Hs108|chr7         ( 313) 2131 487.3 6.6e-138
CCDS83193.1 STYXL1 gene_id:51657|Hs108|chr7        ( 217) 1112 258.5 3.4e-69


>>CCDS5580.1 STYXL1 gene_id:51657|Hs108|chr7              (313 aa)
 initn: 2131 init1: 2131 opt: 2131  Z-score: 2589.3  bits: 487.3 E(32554): 6.6e-138
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)

               10        20        30        40        50        60
pF1KE5 MPGLLLCEPTELYNILNQATKLSRLTDPNYLCLLDVRSKWEYDESHVITALRVKKKNNEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPGLLLCEPTELYNILNQATKLSRLTDPNYLCLLDVRSKWEYDESHVITALRVKKKNNEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLPESVDLECVKYCVVYDNNSSTLEILLKDDDDDSDSDGDGKDLVPQAAIEYGRILTRLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LLPESVDLECVKYCVVYDNNSSTLEILLKDDDDDSDSDGDGKDLVPQAAIEYGRILTRLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 HHPVYILKGGYERFSGTYHFLRTQKIIWMPQELDAFQPYPIEIVPGKVFVGNFSQACDPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HHPVYILKGGYERFSGTYHFLRTQKIIWMPQELDAFQPYPIEIVPGKVFVGNFSQACDPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 IQKDLKIKAHVNVSMDTGPFFAGDADKLLHIRIEDSPEAQILPFLRHMCHFIEIHHHLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IQKDLKIKAHVNVSMDTGPFFAGDADKLLHIRIEDSPEAQILPFLRHMCHFIEIHHHLGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 VILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCKNNMCPNRGLVSQLLEWEKTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCKNNMCPNRGLVSQLLEWEKTI
              250       260       270       280       290       300

              310   
pF1KE5 LGDSITNIMDPLY
       :::::::::::::
CCDS55 LGDSITNIMDPLY
              310   

>>CCDS83193.1 STYXL1 gene_id:51657|Hs108|chr7             (217 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 1355.7  bits: 258.5 E(32554): 3.4e-69
Smith-Waterman score: 1274; 69.3% identity (69.3% similar) in 313 aa overlap (1-313:1-217)

               10        20        30        40        50        60
pF1KE5 MPGLLLCEPTELYNILNQATKLSRLTDPNYLCLLDVRSKWEYDESHVITALRVKKKNNEY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS83 MPGLLLCEPTELYNILNQATKLSRLTDPNYLCLLDVRSKWEYDESHVITALRVKK-----
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE5 LLPESVDLECVKYCVVYDNNSSTLEILLKDDDDDSDSDGDGKDLVPQAAIEYGRILTRLT
                                                                   
CCDS83 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE5 HHPVYILKGGYERFSGTYHFLRTQKIIWMPQELDAFQPYPIEIVPGKVFVGNFSQACDPK
                                      :::::::::::::::::::::::::::::
CCDS83 -------------------------------ELDAFQPYPIEIVPGKVFVGNFSQACDPK
                                         60        70        80    

              190       200       210       220       230       240
pF1KE5 IQKDLKIKAHVNVSMDTGPFFAGDADKLLHIRIEDSPEAQILPFLRHMCHFIEIHHHLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IQKDLKIKAHVNVSMDTGPFFAGDADKLLHIRIEDSPEAQILPFLRHMCHFIEIHHHLGS
           90       100       110       120       130       140    

              250       260       270       280       290       300
pF1KE5 VILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCKNNMCPNRGLVSQLLEWEKTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCKNNMCPNRGLVSQLLEWEKTI
          150       160       170       180       190       200    

              310   
pF1KE5 LGDSITNIMDPLY
       :::::::::::::
CCDS83 LGDSITNIMDPLY
          210       




313 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:23:05 2016 done: Tue Nov  8 00:23:05 2016
 Total Scan time:  2.150 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]