FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5361, 304 aa
  1>>>pF1KE5361 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4069+/-0.000329; mu= 15.6657+/- 0.021
 mean_var=71.7113+/-14.392, 0's: 0 Z-trim(115.2): 19  B-trim: 67 in 1/51
 Lambda= 0.151454
 statistics sampled from 25550 (25568) to 25550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.3), width:  16
 Scan time:  7.680

The best scores are:                                      opt bits E(85289)
NP_644812 (OMIM: 609668) protein phosphatase PTC7  ( 304) 2041 454.9 9.4e-128


>>NP_644812 (OMIM: 609668) protein phosphatase PTC7 homo  (304 aa)
 initn: 2041 init1: 2041 opt: 2041  Z-score: 2414.6  bits: 454.9 E(85289): 9.4e-128
Smith-Waterman score: 2041; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KE5 MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 MFSVLSYGRLVARAVLGGLSQTDPRAGGGGGGDYGLVTAGCGFGKDFRKGLLKKGACYGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 DACFVARHRSADVLGVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 TSYCELLQNKVPLLGSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 NTPFQLSIAPPEAEGVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 LKNSNYESIQQTARSIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVA
              250       260       270       280       290       300

           
pF1KE5 EYTD
       ::::
NP_644 EYTD
           




304 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:06:55 2016 done: Tue Nov  8 00:06:56 2016
 Total Scan time:  7.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]