FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5350, 306 aa
  1>>>pF1KE5350 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3614+/-0.000743; mu= 15.7031+/- 0.045
 mean_var=71.5467+/-14.033, 0's: 0 Z-trim(109.3): 11  B-trim: 0 in 0/52
 Lambda= 0.151628
 statistics sampled from 10775 (10777) to 10775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS61999.1 PKD1L2 gene_id:114780|Hs108|chr16      ( 306) 2007 447.8 4.7e-126


>>CCDS61999.1 PKD1L2 gene_id:114780|Hs108|chr16           (306 aa)
 initn: 2007 init1: 2007 opt: 2007  Z-score: 2376.5  bits: 447.8 E(32554): 4.7e-126
Smith-Waterman score: 2007; 99.7% identity (99.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE5 MGEDSPVAMFSWYLDNTPTEQAEPLPDACRLRGFWPRSLTLLQSNTSTLLLNSSFLQSRG
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS61 MGEDSPVAMFSWYLDNTPTEQAEPLLDACRLRGFWPRSLTLLQSNTSTLLLNSSFLQSRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EVIRIRATALTRHAYGEDTYVISTVPPREVPACTIAPEEGTVLTSFAIFCNASTALGPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 EVIRIRATALTRHAYGEDTYVISTVPPREVPACTIAPEEGTVLTSFAIFCNASTALGPLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FCFCLESGSCLHCGPEPALPSVYLPLGEENNDFVLTVVISATNRAGDTQQTQAMAKVALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 FCFCLESGSCLHCGPEPALPSVYLPLGEENNDFVLTVVISATNRAGDTQQTQAMAKVALG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 DTCVEDVAFQAAVSEKIPTALQGEGGPEQLLQLAKAVSSMLNQEHESQGSGQSLSIDVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DTCVEDVAFQAAVSEKIPTALQGEGGPEQLLQLAKAVSSMLNQEHESQGSGQSLSIDVRQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 KVREHVLGSLSAVTTGLEDVQRVQELAEVLREVTCRSKELTPSAQGSCMGDSWEGAPPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 KVREHVLGSLSAVTTGLEDVQRVQELAEVLREVTCRSKELTPSAQGSCMGDSWEGAPPAA
              250       260       270       280       290       300

             
pF1KE5 HVSHAR
       ::::::
CCDS61 HVSHAR
             




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 00:01:25 2016 done: Tue Nov  8 00:01:25 2016
 Total Scan time:  2.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]