FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5342, 273 aa
  1>>>pF1KE5342 273 - 273 aa - 273 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8429+/-0.000395; mu= 17.3113+/- 0.024
 mean_var=61.7160+/-12.685, 0's: 0 Z-trim(111.0): 21  B-trim: 0 in 0/50
 Lambda= 0.163258
 statistics sampled from 19464 (19472) to 19464 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.228), width:  16
 Scan time:  6.970

The best scores are:                                      opt bits E(85289)
NP_057044 (OMIM: 610101) copper homeostasis protei ( 273) 1765 424.4 1.1e-118


>>NP_057044 (OMIM: 610101) copper homeostasis protein cu  (273 aa)
 initn: 1765 init1: 1765 opt: 1765  Z-score: 2251.6  bits: 424.4 E(85289): 1.1e-118
Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KE5 MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MKRQGASSERKRARIPSGKAGAANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 EDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSSALE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGATEFHCSARSTRDSGMKFRNSSV
              190       200       210       220       230       240

              250       260       270   
pF1KE5 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV
       :::::::::::::::::::::::::::::::::
NP_057 AMGASLSCSEYSLKVTDVTKVRTLNAIAKNILV
              250       260       270   




273 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:56:44 2016 done: Mon Nov  7 23:56:45 2016
 Total Scan time:  6.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]