FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5329, 273 aa
  1>>>pF1KE5329 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9148+/-0.000926; mu= 11.9320+/- 0.055
 mean_var=90.4605+/-17.845, 0's: 0 Z-trim(107.0): 67  B-trim: 2 in 1/51
 Lambda= 0.134848
 statistics sampled from 9254 (9321) to 9254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9       ( 273) 1786 357.5 5.8e-99
CCDS6464.1 CD274 gene_id:29126|Hs108|chr9          ( 290)  370 82.0 5.2e-16


>>CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9            (273 aa)
 initn: 1786 init1: 1786 opt: 1786  Z-score: 1890.1  bits: 357.5 E(32554): 5.8e-99
Smith-Waterman score: 1786; 99.6% identity (99.6% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KE5 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITASLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITASLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ASYRKINTHILKVPETDEVELTCQATGYPLAEVSWPNVSVPANTSHSRTPEGLYQVTSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ASYRKINTHILKVPETDEVELTCQATGYPLAEVSWPNVSVPANTSHSRTPEGLYQVTSVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 RLKPPPGRNFSCVFWNTHVRELTLASIDLQSQMEPRTHPTWLLHIFIPSCIIAFIFIATV
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS64 RLKPPPGRNFSCVFWNTHVRELTLASIDLQSQMEPRTHPTWLLHIFIPFCIIAFIFIATV
              190       200       210       220       230       240

              250       260       270   
pF1KE5 IALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI
       :::::::::::::::::::::::::::::::::
CCDS64 IALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI
              250       260       270   

>>CCDS6464.1 CD274 gene_id:29126|Hs108|chr9               (290 aa)
 initn: 362 init1: 208 opt: 370  Z-score: 401.0  bits: 82.0 E(32554): 5.2e-16
Smith-Waterman score: 494; 39.0% identity (65.6% similar) in 282 aa overlap (15-268:14-288)

               10        20        30        40        50          
pF1KE5 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITAS--
                     : . : :::::::.::..:.:::.:.::.: . ....:.:. .   
CCDS64  MRIFAVFIFMTYWHLLNA-FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWE
                10         20        30        40        50        

             60              70        80        90       100      
pF1KE5 ------LQKV--ENDT----SPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIY
             .: :  :.:     : .:.:: ::..:: ::.:...: .:...: : :.:.: :
CCDS64 MEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY
       60        70        80        90       100       110        

        110       120       130        140       150            160
pF1KE5 GVAWDYKYLTLKVKASYRKINTHILKV-PETDEVELTCQATGYPLAEVSWPN-----VSV
       : : ::: .:.::.: : ::: .:: : : :.: :::::: ::: ::: : .     .: 
CCDS64 GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG
      120        130       140       150       160       170       

              170       180       190            200       210     
pF1KE5 PANTSHSRTPEGLYQVTSVLRLKPPPGRNFSCVFW-----NTHVRELTLASIDLQSQMEP
        ..:..:.  : :..:::.::..   .. : :.:      ..:. ::..  . :    . 
CCDS64 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE
       180       190       200       210       220       230       

         220       230        240         250       260       270  
pF1KE5 RTHPTWLLHIFIPSCI-IAFIFIATVIALRK--QLCQKLYSSKDTTKRPVTTTKREVNSA
       ::: . :  :..  :. .:. ::   . :::  ..  :  . .::...  . :. :    
CCDS64 RTHLVILGAILL--CLGVALTFI---FRLRKGRMMDVKKCGIQDTNSKKQSDTHLEET  
       240         250          260       270       280       290  

        
pF1KE5 I




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:49:38 2016 done: Mon Nov  7 23:49:38 2016
 Total Scan time:  2.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]