Result of FASTA (omim) for
pFN21AE5328
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5328, 272 aa
1>>>pF1KE5328 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3773+/-0.000276; mu= 15.8584+/- 0.017
mean_var=77.0842+/-14.898, 0's: 0 Z-trim(119.4): 22 B-trim: 0 in 0/54
Lambda= 0.146080
statistics sampled from 33296 (33319) to 33296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.391), width: 16
Scan time: 7.130
The best scores are: opt bits E(85289)
NP_005390 (OMIM: 602741) 5'-AMP-activated protein ( 272) 1840 396.4 2.9e-110
XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 265) 1685 363.8 1.9e-100
XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-acti ( 270) 1298 282.2 6.9e-76
NP_006244 (OMIM: 602740) 5'-AMP-activated protein ( 270) 1298 282.2 6.9e-76
XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-acti ( 197) 963 211.5 9.7e-55
>>NP_005390 (OMIM: 602741) 5'-AMP-activated protein kina (272 aa)
initn: 1840 init1: 1840 opt: 1840 Z-score: 2100.7 bits: 396.4 E(85289): 2.9e-110
Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
190 200 210 220 230 240
250 260 270
pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
::::::::::::::::::::::::::::::::
NP_005 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
250 260 270
>>XP_011508031 (OMIM: 602741) PREDICTED: 5'-AMP-activate (265 aa)
initn: 1685 init1: 1685 opt: 1685 Z-score: 1924.3 bits: 363.8 E(85289): 1.9e-100
Smith-Waterman score: 1685; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
190 200 210 220 230 240
250 260 270
pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
:::::::
XP_011 LYALSIKIKKLRLREGQIARQCDGP
250 260
>>XP_005253966 (OMIM: 602740) PREDICTED: 5'-AMP-activate (270 aa)
initn: 1276 init1: 555 opt: 1298 Z-score: 1483.4 bits: 282.2 E(85289): 6.9e-76
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270)
10 20 30 40 50
pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .::
XP_005 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.::::::::
XP_005 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:
XP_005 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
.::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
XP_005 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
180 190 200 210 220 230
240 250 260 270
pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
:::::::::.:::::::::::::::::::::::
XP_005 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
240 250 260 270
>>NP_006244 (OMIM: 602740) 5'-AMP-activated protein kina (270 aa)
initn: 1276 init1: 555 opt: 1298 Z-score: 1483.4 bits: 282.2 E(85289): 6.9e-76
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270)
10 20 30 40 50
pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .::
NP_006 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.::::::::
NP_006 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:
NP_006 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
.::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
NP_006 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
180 190 200 210 220 230
240 250 260 270
pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
:::::::::.:::::::::::::::::::::::
NP_006 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
240 250 260 270
>>XP_016857186 (OMIM: 602741) PREDICTED: 5'-AMP-activate (197 aa)
initn: 963 init1: 963 opt: 963 Z-score: 1103.7 bits: 211.5 E(85289): 9.7e-55
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
:::::::::::::::::::
XP_016 GEHQYKFFVDGQWVHDPSETFPAHPQGLMVKKCMRFDLRKDSNPHPSFLLIYFKLFLTKT
130 140 150 160 170 180
272 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:49:03 2016 done: Mon Nov 7 23:49:04 2016
Total Scan time: 7.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]