FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5328, 272 aa
  1>>>pF1KE5328 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9097+/-0.000639; mu= 12.5872+/- 0.039
 mean_var=76.8291+/-15.201, 0's: 0 Z-trim(112.0): 6  B-trim: 0 in 0/51
 Lambda= 0.146323
 statistics sampled from 12805 (12810) to 12805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1           ( 272) 1840 397.1 6.8e-111
CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12         ( 270) 1298 282.7 1.9e-76


>>CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1                (272 aa)
 initn: 1840 init1: 1840 opt: 1840  Z-score: 2104.3  bits: 397.1 E(32554): 6.8e-111
Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH
              190       200       210       220       230       240

              250       260       270  
pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       ::::::::::::::::::::::::::::::::
CCDS92 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
              250       260       270  

>>CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12              (270 aa)
 initn: 1276 init1: 555 opt: 1298  Z-score: 1486.0  bits: 282.7 E(32554): 1.9e-76
Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270)

               10         20        30        40        50         
pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF
       ::::.:.:.. ::::. :. : ...::   : . ::.. : .: ..:   . : :  .::
CCDS91 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP
       ..::.::: . :   ::::::.::. :::::..:::::::: :.:: .:::.::::::::
CCDS91 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP
               70        80        90       100        110         

     120       130       140       150       160       170         
pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR
       ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..:  
CCDS91 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS--
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN
       .::::::::: :: :. . ::::..:::::::::::::::::.:::::::::::::::::
CCDS91 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN
       180       190       200       210       220       230       

     240       250       260       270  
pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
       :::::::::.:::::::::::::::::::::::
CCDS91 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI
       240       250       260       270




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:49:02 2016 done: Mon Nov  7 23:49:03 2016
 Total Scan time:  2.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]