FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5326, 278 aa
  1>>>pF1KE5326 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0403+/-0.000912; mu= 11.9447+/- 0.055
 mean_var=81.0607+/-15.765, 0's: 0 Z-trim(106.2): 19  B-trim: 0 in 0/51
 Lambda= 0.142452
 statistics sampled from 8838 (8844) to 8838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS9322.1 MTIF3 gene_id:219402|Hs108|chr13        ( 278) 1777 374.7  4e-104


>>CCDS9322.1 MTIF3 gene_id:219402|Hs108|chr13             (278 aa)
 initn: 1777 init1: 1777 opt: 1777  Z-score: 1982.8  bits: 374.7 E(32554): 4e-104
Smith-Waterman score: 1777; 99.3% identity (99.6% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE5 MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TQNEGKKTKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL
              190       200       210       220       230       240

              250       260       270        
pF1KE5 RALSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ
       ::.:::::::::::::::::::::::::::::::::::
CCDS93 RAFSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ
              250       260       270        




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:48:27 2016 done: Mon Nov  7 23:48:28 2016
 Total Scan time:  2.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]