FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5314, 288 aa
  1>>>pF1KE5314 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8611+/-0.000787; mu= 13.5662+/- 0.048
 mean_var=81.8846+/-16.826, 0's: 0 Z-trim(109.4): 12  B-trim: 56 in 1/51
 Lambda= 0.141734
 statistics sampled from 10879 (10883) to 10879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.334), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS7121.1 HACD1 gene_id:9200|Hs108|chr10          ( 288) 1887 395.0 3.2e-110
CCDS46895.1 HACD2 gene_id:201562|Hs108|chr3        ( 254) 1070 228.0 5.7e-60
CCDS45282.1 HACD3 gene_id:51495|Hs108|chr15        ( 362)  357 82.2 5.9e-16
CCDS43791.1 HACD4 gene_id:401494|Hs108|chr9        ( 232)  292 68.8 4.1e-12


>>CCDS7121.1 HACD1 gene_id:9200|Hs108|chr10               (288 aa)
 initn: 1887 init1: 1887 opt: 1887  Z-score: 2092.2  bits: 395.0 E(32554): 3.2e-110
Smith-Waterman score: 1887; 99.3% identity (99.7% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE5 MGRLTEAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MGRLTEAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 APGKRRRLGFLATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQT
       :::.::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 APGERRRLGVLATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 TRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPN
              190       200       210       220       230       240

              250       260       270       280        
pF1KE5 KYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVLHGEVIVEKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 KYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVLHGEVIVEKDD
              250       260       270       280        

>>CCDS46895.1 HACD2 gene_id:201562|Hs108|chr3             (254 aa)
 initn: 1095 init1: 1040 opt: 1070  Z-score: 1190.1  bits: 228.0 E(32554): 5.7e-60
Smith-Waterman score: 1070; 62.1% identity (87.1% similar) in 248 aa overlap (37-281:2-248)

         10        20        30        40        50        60      
pF1KE5 AAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMASSDEDGTNGGASEAGEDREAPGKRR
                                     ::. :..   :..::...::   .: : :.
CCDS46                              MAAVAATAAAKGNGGGGGRAGAG-DASGTRK
                                            10        20         30

         70          80        90       100       110       120    
pF1KE5 RLGF--LATAWLTFYDIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALL
       . :   ::::.:..:...:::::::.:...:: :. ::....:: ::.: :::::: :::
CCDS46 KKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALL
               40        50        60        70        80        90

          130       140       150       160       170       180    
pF1KE5 EIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYS
       ::.:: :::::.::..:. :: ::.:..: .:::.: .:.:.::.::..:::.::: :::
CCDS46 EILHCAIGIVPSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAWTITEIIRYS
              100       110       120       130       140       150

          190       200       210       220       230       240    
pF1KE5 FYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNV
       :::::::.::::.::::::..::.:::.::.::::::::::: :...:..:: :::::: 
CCDS46 FYTFSLLNHLPYLIKWARYTLFIVLYPMGVSGELLTIYAALPFVRQAGLYSISLPNKYNF
              160       170       180       190       200       210

          250       260       270        280        
pF1KE5 SFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL-HGEVIVEKDD
       ::::: ::.. : ::::.::::::::..::::.: : :       
CCDS46 SFDYYAFLILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKKFE 
              220       230       240       250     

>>CCDS45282.1 HACD3 gene_id:51495|Hs108|chr15             (362 aa)
 initn: 285 init1: 230 opt: 357  Z-score: 399.9  bits: 82.2 E(32554): 5.9e-16
Smith-Waterman score: 357; 27.8% identity (61.4% similar) in 223 aa overlap (60-276:134-352)

      30        40        50        60        70        80         
pF1KE5 SPTSPRCAATMASSDEDGTNGGASEAGEDREAPGKRRRLGFLATAWLTFYDIAMTAG--W
                                     :. :. . :  :  ..: .:....  :  :
CCDS45 APDFDRWLDESDAEMELRAKEEERLNKLRLESEGSPETLTNLRKGYLFMYNLVQFLGFSW
           110       120       130       140       150       160   

        90        100       110       120       130       140      
pF1KE5 LVLAIAMVRF-YMEKGTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVS
       . . .. :::  . : .    ....   . : : .:..: ..  ::.. . :. . .:. 
CCDS45 IFVNLT-VRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAAIGVTTSPVLPSLIQLL
            170       180       190       200       210       220  

        150       160       170       180       190       200      
pF1KE5 SRIFMVWLITHSIKPIQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFF
       .: :....:  ... .::.  : . .  :.. :: ::::: .. .:     . : ::...
CCDS45 GRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYMLTCIDMDWKVLTWLRYTLW
            230       240       250       260       270       280  

        210       220       230       240       250       260      
pF1KE5 IILYPVGVAGELLTIYAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQL
       : :::.:  .: ...  ..:  ..:: ::. ::   ...  . .:: : .   : .:  :
CCDS45 IPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRFSFFLQIYL---IMIFLGL
            290       300       310       320       330            

           270       280        
pF1KE5 YF---HMLRQRRKVLHGEVIVEKDD
       :.   :. .:::.            
CCDS45 YINFRHLYKQRRRRYGQKKKKIH  
     340       350       360    

>>CCDS43791.1 HACD4 gene_id:401494|Hs108|chr9             (232 aa)
 initn: 246 init1: 226 opt: 292  Z-score: 331.0  bits: 68.8 E(32554): 4.1e-12
Smith-Waterman score: 292; 23.8% identity (59.0% similar) in 210 aa overlap (74-278:18-222)

            50        60        70        80          90       100 
pF1KE5 DEDGTNGGASEAGEDREAPGKRRRLGFLATAWLTFYDIAMTAG--WLVLAIAMVRFYMEK
                                     :.: .: . .  :  :.   ...  : . :
CCDS43              MGPLALPAWLQPRYRKNAYLFIYYLIQFCGHSWIFTNMTVRFFSFGK
                            10        20        30        40       

             110       120       130       140       150       160 
pF1KE5 GTHRGLYKSIQKTLKFFQTFALLEIVHCLIGIVPTSVIVTGVQVSSRIFMVWLITHSIKP
        .    . .:  .... :. .:::..:  .::  . ..   .:.. ::......  : . 
CCDS43 DSMVDTFYAIGLVMRLCQSVSLLELLHIYVGIESNHLLPRFLQLTERIIILFVVITSQEE
        50        60        70        80        90       100       

             170       180       190       200       210       220 
pF1KE5 IQNEESVVLFLVAWTVTEITRYSFYTFSLLDHLPYFIKWARYNFFIILYPVGVAGELLTI
       .:..  : ...: :.. ...::..  .:..      . :   .... .::. : .: ..:
CCDS43 VQEKYVVCVLFVFWNLLDMVRYTYSMLSVIGISYAVLTWLSQTLWMPIYPLCVLAEAFAI
       110       120       130       140       150       160       

             230       240       250       260          270        
pF1KE5 YAALPHVKKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYF---HMLRQRRKVL
       : .::. .. : .: .::   .. : :   . . :     ::  .::   :.  .:: .:
CCDS43 YQSLPYFESFGTYSTKLPFDLSIYFPYVLKIYLMM-----LFIGMYFTYSHLYSERRDIL
       170       180       190       200            210       220  

      280        
pF1KE5 HGEVIVEKDD
                 
CCDS43 GIFPIKKKKM
            230  




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:30:44 2016 done: Tue Nov  8 07:30:45 2016
 Total Scan time:  2.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]